hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-00211456/chunk_1/iprscan-20080808-00211456.nocrc
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Query sequence: bm05540
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TIGR00873 gnd: 6-phosphogluconate dehydrogenase, decar  1140.5          0   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TIGR00873   1/1      18   484 ..     1   480 []  1140.5        0

Alignments of top-scoring domains:
TIGR00873: domain 1 of 1, from 18 to 484: score 1140.5, E = 0
                   *->dIGvIGLAVMGsNLaLNmadhGFtVaVYNRtpeKTdeFLkerakGkk
                      dI +IGLAVMG+NL+LNm+dhGF V+++NRt++K+d+FL+++akG+k
     bm05540    18    DIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTK 64   

                   ivGaysieeFVqsLerPRKImLMVKAGapVDADavInsLlPlLEkGDIII
                    vGa s++e V++L++PR+I+L+VKAG +V  D +I+ L+PlL+ GDIII
     bm05540    65 VVGAQSLKEMVSKLKKPRRIILLVKAGQAV--DDFIEKLVPLLDTGDIII 112  

                   DGGNShYkDTeRRykeLkakGIlFvGvGVSGGEEGAlkGPSiMPGGsaeA
                   DGGNS Y DT RR+++LkakGIlFvG+GVSGGEEGA++GPS+MPGG++eA
     bm05540   113 DGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGPSLMPGGNKEA 162  

                   yplvaPIlqkIAAkvddPDGePCCtwIGpdGAGHYVKMVHNGIEYGDMQL
                   +p+++ I+q IAAkv+   GePCC+w+G +GAGH+VKMVHNGIEYGDMQL
     bm05540   163 WPHIKTIFQGIAAKVGT--GEPCCDWVGDEGAGHFVKMVHNGIEYGDMQL 210  

                   IaEAYdiLKegLgLsneeiaevFteWNnGeLdSYLIEITadILakKDedT
                   I+EAY ++K+ Lg+  +e+a+ F+ WN +eLdS+LIEITa IL+++D+d 
     bm05540   211 ICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEITANILKFQDTD- 259  

                   GkpLvDkILDtAGQKGTGkWTaidALdlGvPltLItESVFARyLSslKee
                   Gk+L+ kI D AGQKGTGkWTai+AL+ GvP+tLI+E+VFAR+LSslK+e
     bm05540   260 GKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDE 309  

                   RvaAskllsGdPlaeekalqDkeefIedVrqALYaSKIvSYAQGFmLlke
                   R++Ask l+G P+++++   Dk+ f ed r+ALYaSKI+SYAQGFmLl++
     bm05540   310 RIQASKKLKG-PQKFQFDG-DKKSFLEDIRKALYASKIISYAQGFMLLRQ 357  

                   ASeeyGWdLNlgeIAliWRGGCIIRSaFLdkIkkAFaanPnLaNLllapY
                   A+ e+GW+LN+g IAl+WRGGCIIRS+FL+kIk+AF+ nP+L NLll+++
     bm05540   358 AATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPELQNLLLDDF 407  

                   FkdalkdaqsgWRrvVakAielGIPvPafSaALsfYDGYRtarLPaNLlQ
                   Fk a+++ q++WRr+V++++++GIP+P+f++ALsfYDGYR + LPa+L+Q
     bm05540   408 FKSAVENCQDSWRRAVSTGVQAGIPMPCFTTALSFYDGYRHEMLPASLIQ 457  

                   AQRDYFGAHTYRvLPEERtDkPRGEfFHTnWtg<-*
                   AQRDYFGAHTY     E + kP+  f+HTnWtg   
     bm05540   458 AQRDYFGAHTY-----ELLAKPG-QFIHTNWTG    484  

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