hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-00271150/chunk_1/iprscan-20080808-00271150.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: bm05545
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF00069.15.ls Protein kinase domain                       292.9    5.6e-85   1
PF00069.15.fs Protein kinase domain                       291.0    2.1e-84   1
PF07714.7.fs Protein tyrosine kinase                      55.3    5.9e-16   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF00069.15.fs   1/1     120   380 ..     1   287 []   291.0  2.1e-84
PF07714.7.fs   1/1     120   263 ..     1   158 [.    55.3  5.9e-16
PF00069.15.ls   1/1     120   380 ..     1   287 []   292.9  5.6e-85

Alignments of top-scoring domains:
PF00069.15.fs: domain 1 of 1, from 120 to 380: score 291.0, E = 2.1e-84
                   *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr
                      ++++++lG+Gsf+tV +a++  t++++A+Ki++kr++ ++ +   + 
     bm05545   120    FKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVT 166  

                   lsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdylse
                   + E  ++ rL+Hp+ v+l+ +f+d+ +ly+ l y+ +G    +L  y++ 
     bm05545   167 R-ERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNG----ELLKYIR- 210  

                   trrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldnngv
                     + g++  +e   +++  +i+++leYLH +giiHRDLKPeNILl+++++
     bm05545   211 --KIGSF--DETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMH 256  

                   vdaflKiaDFGlAkkls.t.sss.lttfvGTpwYmAPEvllggngygtkv
                   +     i+DFG Ak+ls+++++ ++++fvGT  Y++PE+l   +   +++
     bm05545   257 I----QITDFGTAKVLSpEsKQArANSFVGTAQYVSPELLT-EKSACKSS 301  

                   DvWSlGvilyelltGkpPFsgevqdsldqlqlirkilgpplefdspewds
                   D W+lG+i+y+l+ G pPF+       +++ +++ki + +++f++     
     bm05545   302 DLWALGCIIYQLVAGLPPFRAG-----NEYLIFQKIIKLEYDFPEKFF-- 344  

                   isrsefrrlpnlseeakdLikkcLnkDPskRltaee......ilqHPwf<
                                + a+dL++k+L +D +kRl++ee ++ ++++ HP+f 
     bm05545   345 -------------PKARDLVEKLLVLDATKRLGCEEmegygpLKAHPFF  380  

                   -*
                     
     bm05545     -    -    

PF07714.7.fs: domain 1 of 1, from 120 to 263: score 55.3, E = 5.9e-16
                   *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtL.ke.igaseee
                      +k+gk LGeG+F +V++++       t  + A+K+L+k +i    + 
     bm05545   120    FKFGKILGEGSFSTVVLAREL----ATSREYAIKILeKRhIIKENK- 161  

                   ieredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegG
                          rE  +M++l dHp  V+L+    + +e     ly  + y+++G
     bm05545   162 --VPYVTRERDVMSRL-DHPFFVKLYFTFQD-DEK----LYFGLSYAKNG 203  

                   dLldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcL
                    Ll++ rk    ++++      + ++i +++eYL+ k+++HRDL   N+L
     bm05545   204 ELLKYIRK---IGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENIL 250  

                   VsenlvVKIsDFG<-*
                   ++e++++ I+DFG   
     bm05545   251 LNEDMHIQITDFG    263  

PF00069.15.ls: domain 1 of 1, from 120 to 380: score 292.9, E = 5.6e-85
                   *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr
                      ++++++lG+Gsf+tV +a++  t++++A+Ki++kr++ ++ +   + 
     bm05545   120    FKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVT 166  

                   lsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdylse
                   + E  ++ rL+Hp+ v+l+ +f+d+ +ly+ l y+ +G    +L  y++ 
     bm05545   167 R-ERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNG----ELLKYIR- 210  

                   trrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldnngv
                     + g++  +e   +++  +i+++leYLH +giiHRDLKPeNILl+++++
     bm05545   211 --KIGSF--DETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMH 256  

                   vdaflKiaDFGlAkkls.t.sss.lttfvGTpwYmAPEvllggngygtkv
                   +     i+DFG Ak+ls+++++ ++++fvGT  Y++PE+l   +   +++
     bm05545   257 I----QITDFGTAKVLSpEsKQArANSFVGTAQYVSPELLT-EKSACKSS 301  

                   DvWSlGvilyelltGkpPFsgevqdsldqlqlirkilgpplefdspewds
                   D W+lG+i+y+l+ G pPF+       +++ +++ki + +++f++     
     bm05545   302 DLWALGCIIYQLVAGLPPFRAG-----NEYLIFQKIIKLEYDFPEKFF-- 344  

                   isrsefrrlpnlseeakdLikkcLnkDPskRltaee......ilqHPwf<
                                + a+dL++k+L +D +kRl++ee ++ ++++ HP+f 
     bm05545   345 -------------PKARDLVEKLLVLDATKRLGCEEmegygpLKAHPFF  380  

                   -*
                     
     bm05545     -    -    

//