hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-00334060/chunk_1/iprscan-20080808-00334060.nocrc
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Query sequence: bm05546
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
PF00339.19.ls Arrestin (or S-antigen), N-terminal domain   168.3    1.8e-47   1
PF00339.19.fs Arrestin (or S-antigen), N-terminal domain   166.5    6.2e-47   1
PF02752.12.ls Arrestin (or S-antigen), C-terminal domain   102.6    1.1e-27   1
PF02752.12.fs Arrestin (or S-antigen), C-terminal domain   100.9    2.4e-27   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PF00339.19.fs   1/1      16   158 ..     1   175 []   166.5  6.2e-47
PF00339.19.ls   1/1      16   158 ..     1   175 []   168.3  1.8e-47
PF02752.12.fs   1/1     180   307 ..     1   172 []   100.9  2.4e-27
PF02752.12.ls   1/1     180   307 ..     1   172 []   102.6  1.1e-27

Alignments of top-scoring domains:
PF00339.19.fs: domain 1 of 1, from 16 to 158: score 166.5, E = 6.2e-47
                   *->ftiyldrnakpdpvYhpGyVetvsGrVllDetkepikvravkitlkG
                      f+++++    p++vY +G  e+v+GrV++ e++e ++v+av+i+++G
     bm05546    16    FEVVFN---DPEKVYGSG--EKVAGRVIV-EVCEVTRVKAVRILACG 56   

                   eartgweesevmgrtfrkdLylaeeqiyptvnysgkeeYldtqtrLwgkk
                    a++ w+  +  +++++                    eYl+++++L+  +
     bm05546    57 VAKVLWMQGSQQCKQTS--------------------EYLRYEDTLLLED 86   

                   dg......eneLpaGthefPFsfeLPpncLPsSfeGqhGPDqGKpCgIrY
                   + +++++ +++ p  ++e+ F feLP+++L +Sf+G++G       +++Y
     bm05546    87 QPtgenemVIMRPGNKYEYKFGFELPQGPLGTSFKGKYG-------CVDY 129  

                   evkaelaestdrPrwkfdhkrkkvftVirkldln<-*
                   +vka+l    drP   + ++ kk f V+ ++d+n   
     bm05546   130 WVKAFL----DRP-SQPTQETKKNFEVVDLVDVN    158  

PF00339.19.ls: domain 1 of 1, from 16 to 158: score 168.3, E = 1.8e-47
                   *->ftiyldrnakpdpvYhpGyVetvsGrVllDetkepikvravkitlkG
                      f+++++    p++vY +G  e+v+GrV++ e++e ++v+av+i+++G
     bm05546    16    FEVVFN---DPEKVYGSG--EKVAGRVIV-EVCEVTRVKAVRILACG 56   

                   eartgweesevmgrtfrkdLylaeeqiyptvnysgkeeYldtqtrLwgkk
                    a++ w+  +  +++++                    eYl+++++L+  +
     bm05546    57 VAKVLWMQGSQQCKQTS--------------------EYLRYEDTLLLED 86   

                   dg......eneLpaGthefPFsfeLPpncLPsSfeGqhGPDqGKpCgIrY
                   + +++++ +++ p  ++e+ F feLP+++L +Sf+G++G       +++Y
     bm05546    87 QPtgenemVIMRPGNKYEYKFGFELPQGPLGTSFKGKYG-------CVDY 129  

                   evkaelaestdrPrwkfdhkrkkvftVirkldln<-*
                   +vka+l    drP   + ++ kk f V+ ++d+n   
     bm05546   130 WVKAFL----DRP-SQPTQETKKNFEVVDLVDVN    158  

PF02752.12.fs: domain 1 of 1, from 180 to 307: score 100.9, E = 2.4e-27
                   *->sdgpltlevslpkkgYvpGEkIpvtvkidNnSsktvkkikasLvQhv
                      +dg++++++++++kg++ G+ I+++++ +N+ s ++  +ka +v ++
     bm05546   180    PDGRVSVSARIDRKGFCEGDEISIHADFENTCS-RIVVPKAAIVARH 225  

                   tyvaysnakykktVaeeeeegsgcpvapgssglskvkklepllvankekg
                   ty a++                             ++k+ ++ +++ ++ 
     bm05546   226 TYLANG-----------------------------QTKVLTQKLSSVRGN 246  

                   gvaldgklkfegdtlakvliPstlptegtlkecpgdlIqVsYklkVklsl
                   ++  ++   + g++l   ++ ++ p+   + +c++  ++V+Y+l +++s+
     bm05546   247 HIISGTCASWRGKSL---RVQKIRPS---ILGCNI--LRVEYSLLIYVSV 288  

                   sgglgdglgselklelPitigtvpp<-*
                   +      +++++ l+lP++ig+ +    
     bm05546   289 P------GSKKVILDLPLVIGSRSG    307  

PF02752.12.ls: domain 1 of 1, from 180 to 307: score 102.6, E = 1.1e-27
                   *->sdgpltlevslpkkgYvpGEkIpvtvkidNnSsktvkkikasLvQhv
                      +dg++++++++++kg++ G+ I+++++ +N+ s ++  +ka +v ++
     bm05546   180    PDGRVSVSARIDRKGFCEGDEISIHADFENTCS-RIVVPKAAIVARH 225  

                   tyvaysnakykktVaeeeeegsgcpvapgssglskvkklepllvankekg
                   ty a++                             ++k+ ++ +++ ++ 
     bm05546   226 TYLANG-----------------------------QTKVLTQKLSSVRGN 246  

                   gvaldgklkfegdtlakvliPstlptegtlkecpgdlIqVsYklkVklsl
                   ++  ++   + g++l   ++ ++ p+   + +c++  ++V+Y+l +++s+
     bm05546   247 HIISGTCASWRGKSL---RVQKIRPS---ILGCNI--LRVEYSLLIYVSV 288  

                   sgglgdglgselklelPitigtvpp<-*
                   +      +++++ l+lP++ig+ +    
     bm05546   289 P------GSKKVILDLPLVIGSRSG    307  

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