hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-00392768/chunk_1/iprscan-20080808-00392768.nocrc
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Query sequence: bm05568
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00001.12.ls 7 transmembrane receptor (rhodopsin family)     -3.6    3.1e-07   1
PF00001.12.fs 7 transmembrane receptor (rhodopsin family)     17.3    4.7e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00001.12.ls   1/1      10   305 ..     1   272 []    -3.6  3.1e-07
PF00001.12.fs   1/1      70   167 ..    58   178 ..    17.3  4.7e-06

Alignments of top-scoring domains:
PF00001.12.ls: domain 1 of 1, from 10 to 305: score -3.6, E = 3.1e-07
                   *->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyylvg
                       N+ +il i+  ++ ++p  ++++ LA + +L++++  p ++ ++v+
     bm05568    10    ANAWIILSISAKQQKHKPLELLLCFLAGTHILMAAV--PLTTFAVVQ 54   

                   gedWpfGs......alCklvtaldvvnmyaSillLtaISiDRYlAIvhPl
                   + + + +s+ + ++  Ck++++ +++   a +++ + +S+ R + + +P+
     bm05568    55 L-RRQASSdydwneSICKVFVSTYYTLALATCFTVASLSYHRMWMVRWPV 103  

                   ryrrrrtsprrAkvvillvWvlalllslPpllfswvktveegngvvnvtt
                   +yr ++  ++ A+  + ++W ++++ls +p ++ w+++ e      +++ 
     bm05568   104 NYRLSNA-KKQALHAVMGIWMVSFILSTLPSIG-WHNNGERY----YARG 147  

                   ClidfpevstasvktwlvsyallstlvgFvlPllvilvcYtrI..lrtlr
                   C +    +           + +  ++   +l  +v+      I+ + tl+
     bm05568   148 CQFIVSKIG----------LGFGVCFSLLLLGGIVMGLVCVAItfYQTLW 187  

                   krarkgas..........................................
                   +r+r+ ++ ++ +++++++ ++++  ++++  + +    ++ +++++++ 
     bm05568   188 ARPRRARQarrvgggggtkaggpgalgtrpafevpaivvedargkrrssl 237  

                   ..kkrsskerkaaktllvvvvvF.vlCWlPyfivllldtlc.lsiimsss
                   ++ ++++   +++ ++ ++v++ + l  +P  +v +     +++      
     bm05568   238 dgSESAKTSLQVTNLVSAIVFLYdSLTGVPILVVSFFSLKSdSA------ 281  

                   CelervlptallvtlwLayvNsclNP.iIY<-*
                         +p++ l+ lw++++   l P++I    
     bm05568   282 ------PPWMVLAVLWCSMAQTLLLPsFIW    305  

PF00001.12.fs: domain 1 of 1, from 70 to 167: score 17.3, E = 4.7e-06
                   *->CklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrrrtsprrAk
                      Ck++++ +++   a +++ + +S+ R + + +P++yr ++  ++ A+
     bm05568    70    CKVFVSTYYTLALATCFTVASLSYHRMWMVRWPVNYRLSNA-KKQAL 115  

                   vvillvWvlalllslPpllfswvktveegngvvnvttClidfpevstasv
                     + ++W ++++ls +p ++ w+++ e         + + +         
     bm05568   116 HAVMGIWMVSFILSTLPSIG-WHNNGERY-------YARGC--------- 148  

                   ktwlvsyallstlvgFvlPllvil<-*
                        +++++ + +gF ++++++l   
     bm05568   149 -----QFIVSKIGLGFGVCFSLLL    167  

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