hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080808/iprscan-20080808-00455096/chunk_1/iprscan-20080808-00455096.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bm05571 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 371.1 1.6e-108 12 PF00096.16.fs Zinc finger, C2H2 type 350.7 2.2e-102 12 PF01352.17.fs KRAB box 93.0 8.6e-26 1 PF01352.17.ls KRAB box 95.0 2.1e-25 1 PF01096.9.fs Transcription factor S-II (TFIIS) 53.2 8.9e-16 12 PF01286.9.fs XPA protein N-terminal 32.9 1.3e-08 9 PF04032.6.fs RNAse P Rpr2/Rpp21/SNM1 subunit domain 24.7 2.8e-07 7 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01352.17.ls 1/1 29 69 .. 1 41 [] 95.0 2.1e-25 PF01352.17.fs 1/1 29 69 .. 1 41 [] 93.0 8.6e-26 PF00096.16.ls 2/12 211 233 .. 1 24 [] 36.5 8.3e-08 PF00096.16.fs 2/12 211 233 .. 1 24 [] 34.6 2.3e-07 PF00096.16.ls 3/12 267 289 .. 1 24 [] 33.5 7e-07 PF00096.16.fs 3/12 267 289 .. 1 24 [] 31.5 1.3e-06 PF00096.16.ls 4/12 295 317 .. 1 24 [] 30.0 7.7e-06 PF00096.16.fs 4/12 295 317 .. 1 24 [] 28.0 9.7e-06 PF00096.16.fs 5/12 323 345 .. 1 24 [] 31.7 1.2e-06 PF00096.16.ls 5/12 323 345 .. 1 24 [] 33.6 6.2e-07 PF00096.16.fs 6/12 351 373 .. 1 24 [] 31.6 1.3e-06 PF00096.16.ls 6/12 351 373 .. 1 24 [] 33.5 6.6e-07 PF00096.16.ls 7/12 379 401 .. 1 24 [] 32.2 1.7e-06 PF00096.16.fs 7/12 379 401 .. 1 24 [] 30.2 2.8e-06 PF00096.16.ls 8/12 407 429 .. 1 24 [] 30.5 5.3e-06 PF00096.16.fs 8/12 407 429 .. 1 24 [] 28.6 7.2e-06 PF00096.16.ls 9/12 435 457 .. 1 24 [] 35.6 1.6e-07 PF00096.16.fs 9/12 435 457 .. 1 24 [] 33.6 4e-07 PF00096.16.ls 10/12 463 485 .. 1 24 [] 34.8 2.8e-07 PF00096.16.fs 10/12 463 485 .. 1 24 [] 32.8 6.4e-07 PF00096.16.fs 11/12 491 513 .. 1 24 [] 24.4 8e-05 PF00096.16.ls 11/12 491 513 .. 1 24 [] 26.3 9.8e-05 PF00096.16.fs 12/12 519 541 .] 1 24 [] 30.3 2.7e-06 PF00096.16.ls 12/12 519 541 .] 1 24 [] 32.2 1.6e-06 Alignments of top-scoring domains: PF01352.17.ls: domain 1 of 1, from 29 to 69: score 95.0, E = 2.1e-25 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* VtF DVaVdFtqEEW lLd++Qr+LY dVMlENy+nL+ +g bm05571 29 VTFDDVAVDFTQEEWTLLDSTQRSLYSDVMLENYKNLATVG 69 PF01352.17.fs: domain 1 of 1, from 29 to 69: score 93.0, E = 8.6e-26 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* VtF DVaVdFtqEEW lLd++Qr+LY dVMlENy+nL+ +g bm05571 29 VTFDDVAVDFTQEEWTLLDSTQRSLYSDVMLENYKNLATVG 69 PF00096.16.ls: domain 2 of 12, from 211 to 233: score 36.5, E = 8.3e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +CgksF + s L++H+rtH bm05571 211 FECS-HCGKSFINESYLQAHMRTH 233 PF00096.16.fs: domain 2 of 12, from 211 to 233: score 34.6, E = 2.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +CgksF + s L++H+rtH bm05571 211 FECS-HCGKSFINESYLQAHMRTH 233 PF00096.16.ls: domain 3 of 12, from 267 to 289: score 33.5, E = 7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk ++ ++ L H+rtH bm05571 267 YKCK-ECGKGYRYPAYLSIHMRTH 289 PF00096.16.fs: domain 3 of 12, from 267 to 289: score 31.5, E = 1.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk ++ ++ L H+rtH bm05571 267 YKCK-ECGKGYRYPAYLSIHMRTH 289 PF00096.16.ls: domain 4 of 12, from 295 to 317: score 30.0, E = 7.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ + +++ H rtH bm05571 295 YECK-ECGKAFNYSNSFQIHGRTH 317 PF00096.16.fs: domain 4 of 12, from 295 to 317: score 28.0, E = 9.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ + +++ H rtH bm05571 295 YECK-ECGKAFNYSNSFQIHGRTH 317 PF00096.16.fs: domain 5 of 12, from 323 to 345: score 31.7, E = 1.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F++ s L +H r+H bm05571 323 YVCK-ECGKAFTQYSGLSMHVRSH 345 PF00096.16.ls: domain 5 of 12, from 323 to 345: score 33.6, E = 6.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F++ s L +H r+H bm05571 323 YVCK-ECGKAFTQYSGLSMHVRSH 345 PF00096.16.fs: domain 6 of 12, from 351 to 373: score 31.6, E = 1.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksF ++s L +H+rtH bm05571 351 YECK-ECGKSFLTSSRLIQHIRTH 373 PF00096.16.ls: domain 6 of 12, from 351 to 373: score 33.5, E = 6.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksF ++s L +H+rtH bm05571 351 YECK-ECGKSFLTSSRLIQHIRTH 373 PF00096.16.ls: domain 7 of 12, from 379 to 401: score 32.2, E = 1.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +Cgk+F +snL HlrtH bm05571 379 FVCV-ECGKAFAVSSNLSGHLRTH 401 PF00096.16.fs: domain 7 of 12, from 379 to 401: score 30.2, E = 2.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +Cgk+F +snL HlrtH bm05571 379 FVCV-ECGKAFAVSSNLSGHLRTH 401 PF00096.16.ls: domain 8 of 12, from 407 to 429: score 30.5, E = 5.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+F +s L++H+rtH bm05571 407 CECK-ICGKVFGYPSCLNNHMRTH 429 PF00096.16.fs: domain 8 of 12, from 407 to 429: score 28.6, E = 7.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+F +s L++H+rtH bm05571 407 CECK-ICGKVFGYPSCLNNHMRTH 429 PF00096.16.ls: domain 9 of 12, from 435 to 457: score 35.6, E = 1.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ + +Lk H+r+H bm05571 435 YTCK-ECGKAFNYSTHLKIHMRIH 457 PF00096.16.fs: domain 9 of 12, from 435 to 457: score 33.6, E = 4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ + +Lk H+r+H bm05571 435 YTCK-ECGKAFNYSTHLKIHMRIH 457 PF00096.16.ls: domain 10 of 12, from 463 to 485: score 34.8, E = 2.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs++s+++ H rtH bm05571 463 YECK-QCGKAFSHSSSFQIHERTH 485 PF00096.16.fs: domain 10 of 12, from 463 to 485: score 32.8, E = 6.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs++s+++ H rtH bm05571 463 YECK-QCGKAFSHSSSFQIHERTH 485 PF00096.16.fs: domain 11 of 12, from 491 to 513: score 24.4, E = 8e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ +s+++ H +tH bm05571 491 YECK-ECGKAFTCSSSFRIHEKTH 513 PF00096.16.ls: domain 11 of 12, from 491 to 513: score 26.3, E = 9.8e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ +s+++ H +tH bm05571 491 YECK-ECGKAFTCSSSFRIHEKTH 513 PF00096.16.fs: domain 12 of 12, from 519 to 541: score 30.3, E = 2.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk++s++ +L+rH ++H bm05571 519 YKCQ-QCGKAYSHPRSLRRHEQIH 541 PF00096.16.ls: domain 12 of 12, from 519 to 541: score 32.2, E = 1.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk++s++ +L+rH ++H bm05571 519 YKCQ-QCGKAYSHPRSLRRHEQIH 541 //