hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-00455096/chunk_1/iprscan-20080808-00455096.nocrc
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Query sequence: bm05571
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 311.3    6.7e-89  12
SM00349                                                 121.1    1.2e-31   1
SM00614                                                  37.7    1.6e-06   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00349      1/1      29    89 ..     1    62 []   121.1  1.2e-31
SM00355      1/12    133   161 ..     1    23 []     6.7       56
SM00355      2/12    211   233 ..     1    23 []    33.0  4.2e-05
SM00355      3/12    267   289 ..     1    23 []    28.2   0.0011
SM00355      4/12    295   317 ..     1    23 []    21.7     0.11
SM00355      5/12    323   345 ..     1    23 []    29.3  0.00054
SM00355      6/12    351   373 ..     1    23 []    30.6  0.00021
SM00355      7/12    379   401 ..     1    23 []    22.6    0.056
SM00614      1/1     392   432 ..     1    57 []    37.7  1.6e-06
SM00355      8/12    407   429 ..     1    23 []    26.1   0.0048
SM00355      9/12    435   457 ..     1    23 []    31.2  0.00015
SM00355     10/12    463   485 ..     1    23 []    28.1   0.0012
SM00355     11/12    491   513 ..     1    23 []    24.9    0.011
SM00355     12/12    519   541 .]     1    23 []    29.0  0.00065

Alignments of top-scoring domains:
SM00349: domain 1 of 1, from 29 to 89: score 121.1, E = 1.2e-31
                   *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk
                      VtF+DVAVdF+qEEW +LD++Qr LY dVMlENY+nL+ +G  q+ k
     bm05571    29    VTFDDVAVDFTQEEWTLLDSTQRSLYSDVMLENYKNLATVG-GQIIK 74   

                   pdliskLEqgeEpwi<-*
                   p lis+LEq+e   +   
     bm05571    75 PSLISWLEQEESRTV    89   

SM00355: domain 1 of 12, from 133 to 161: score 6.7, E = 56
                   *->ykCpigCgksfssk.aLkrHmr......vH<-*
                        C++ Cg++fs ++ Lk H+r+++++++H   
     bm05571   133    CDCEQ-CGEVFSEHsCLKTHVRtqstgnTH    161  

SM00355: domain 2 of 12, from 211 to 233: score 33.0, E = 4.2e-05
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ Cgksf +++ L+ Hmr+H   
     bm05571   211    FECSH-CGKSFINEsYLQAHMRTH    233  

SM00355: domain 3 of 12, from 267 to 289: score 28.2, E = 0.0011
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgk ++ +  L  Hmr+H   
     bm05571   267    YKCKE-CGKGYRYPaYLSIHMRTH    289  

SM00355: domain 4 of 12, from 295 to 317: score 21.7, E = 0.11
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f+  ++++ H r+H   
     bm05571   295    YECKE-CGKAFNYSnSFQIHGRTH    317  

SM00355: domain 5 of 12, from 323 to 345: score 29.3, E = 0.00054
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f++++ L  H+r+H   
     bm05571   323    YVCKE-CGKAFTQYsGLSMHVRSH    345  

SM00355: domain 6 of 12, from 351 to 373: score 30.6, E = 0.00021
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgksf + + L++H+r+H   
     bm05571   351    YECKE-CGKSFLTSsRLIQHIRTH    373  

SM00355: domain 7 of 12, from 379 to 401: score 22.6, E = 0.056
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C + Cgk f   ++L  H+r+H   
     bm05571   379    FVCVE-CGKAFAVSsNLSGHLRTH    401  

SM00614: domain 1 of 1, from 392 to 432: score 37.7, E = 1.6e-06
                   *->kkrSkvWkhFtkiekkdngkrvetrAkCkyCgkklsysskgGTsnLr
                      ++ S + + +t+  +k         ++Ck+Cgk++ y      s+L+
     bm05571   392    SNLSGHLRTHTE--EKA--------CECKICGKVFGYP-----SCLN 423  

                   rHLrrkHpar<-*
                   +H+r +H+a+   
     bm05571   424 NHMR-THSAQ    432  

SM00355: domain 8 of 12, from 407 to 429: score 26.1, E = 0.0048
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                       +C+i Cgk+f  ++ L++Hmr+H   
     bm05571   407    CECKI-CGKVFGYPsCLNNHMRTH    429  

SM00355: domain 9 of 12, from 435 to 457: score 31.2, E = 0.00015
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f+  ++Lk Hmr+H   
     bm05571   435    YTCKE-CGKAFNYStHLKIHMRIH    457  

SM00355: domain 10 of 12, from 463 to 485: score 28.1, E = 0.0012
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk fs+ ++++ H r+H   
     bm05571   463    YECKQ-CGKAFSHSsSFQIHERTH    485  

SM00355: domain 11 of 12, from 491 to 513: score 24.9, E = 0.011
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f+  ++++ H ++H   
     bm05571   491    YECKE-CGKAFTCSsSFRIHEKTH    513  

SM00355: domain 12 of 12, from 519 to 541: score 29.0, E = 0.00065
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgk +s++++L+rH ++H   
     bm05571   519    YKCQQ-CGKAYSHPrSLRRHEQIH    541  

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