hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-00520874/chunk_1/iprscan-20080808-00520874.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: bm05593
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00804.15.ls Syntaxin                                       132.6      1e-36   1
PF00804.15.fs Syntaxin                                       130.6      4e-36   1
PF05739.9.ls SNARE domain                                   105.3    1.6e-28   1
PF05739.9.fs SNARE domain                                   103.4    6.1e-28   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00804.15.fs   1/1      30   132 ..     1   110 []   130.6    4e-36
PF00804.15.ls   1/1      30   132 ..     1   110 []   132.6    1e-36
PF05739.9.fs   1/1     198   260 ..     1    63 []   103.4  6.1e-28
PF05739.9.ls   1/1     198   260 ..     1    63 []   105.3  1.6e-28

Alignments of top-scoring domains:
PF00804.15.fs: domain 1 of 1, from 30 to 132: score 130.6, E = 4e-36
                   *->slpeFfeekveeIrnniekisqkleeLaklhkkilsppdsdveikel
                      +++eFfe+ veeIr+ i+ki++++ee++++h++il+ p++d   +++
     bm05593    30    FMDEFFEQ-VEEIRGFIDKIAENVEEVKRKHSAILASPNPD---EKT 72   

                   rrkleqliteinqlakklkrklkaleeanlseersqlsssdtrirktqts
                   +++le+l+++i+++a+k++ klk++e+++++ee++++ss+d+rirktq+s
     bm05593    73 KEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQHS 122  

                   llsGlrkkfkevm<-*
                   +ls  rk f+evm   
     bm05593   123 TLS--RK-FVEVM    132  

PF00804.15.ls: domain 1 of 1, from 30 to 132: score 132.6, E = 1e-36
                   *->slpeFfeekveeIrnniekisqkleeLaklhkkilsppdsdveikel
                      +++eFfe+ veeIr+ i+ki++++ee++++h++il+ p++d   +++
     bm05593    30    FMDEFFEQ-VEEIRGFIDKIAENVEEVKRKHSAILASPNPD---EKT 72   

                   rrkleqliteinqlakklkrklkaleeanlseersqlsssdtrirktqts
                   +++le+l+++i+++a+k++ klk++e+++++ee++++ss+d+rirktq+s
     bm05593    73 KEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQHS 122  

                   llsGlrkkfkevm<-*
                   +ls  rk f+evm   
     bm05593   123 TLS--RK-FVEVM    132  

PF05739.9.fs: domain 1 of 1, from 198 to 260: score 103.4, E = 6.1e-28
                   *->eRdeeleelessigeLkqlfldlgteVeeQgellDrIddnventqsr
                       R+ e+ +le si+eL+++f+d++++Ve+Qge++DrI++nve+++++
     bm05593   198    TRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDY 244  

                   verankrLkkaaryqk<-*
                   vera +  kka++yq+   
     bm05593   245 VERAVSDTKKAVKYQS    260  

PF05739.9.ls: domain 1 of 1, from 198 to 260: score 105.3, E = 1.6e-28
                   *->eRdeeleelessigeLkqlfldlgteVeeQgellDrIddnventqsr
                       R+ e+ +le si+eL+++f+d++++Ve+Qge++DrI++nve+++++
     bm05593   198    TRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDY 244  

                   verankrLkkaaryqk<-*
                   vera +  kka++yq+   
     bm05593   245 VERAVSDTKKAVKYQS    260  

//