hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-00575876/chunk_1/iprscan-20080808-00575876.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: bm05625
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00041.11.fs Fibronectin type III domain                     36.9    5.7e-10   2
PF00041.11.ls Fibronectin type III domain                     36.4    8.9e-08   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00041.11.fs   1/2     503   591 ..     1    84 []    29.1  9.8e-08
PF00041.11.ls   1/2     503   591 ..     1    84 []    31.1  3.5e-06

Alignments of top-scoring domains:
PF00041.11.fs: domain 1 of 2, from 503 to 591: score 29.1, E = 9.8e-08
                   *->PsaPtnltvtdvtstsltlsWspPt...gngpitgYevtyRqpkngg
                        +P+ ++v  ++st++  sW+ + ++ ++  ++  ++t+ q++ ++
     bm05625   503    TEKPQHVSVHVLSSTTALMSWTSSQenyNSTIVSVVSLTC-QKQKES 548  

                   e...wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-*
                   ++ +++  t  +++   ++++L+Pg +Y+v ++ ++g   Gp+S   
     bm05625   549 QrleKQYCTQVNSS-KPIIENLVPGAQYQVVIYLRKGPLiGPPS    591  

PF00041.11.ls: domain 1 of 2, from 503 to 591: score 31.1, E = 3.5e-06
                   *->PsaPtnltvtdvtstsltlsWspPt...gngpitgYevtyRqpkngg
                        +P+ ++v  ++st++  sW+ + ++ ++  ++  ++t+ q++ ++
     bm05625   503    TEKPQHVSVHVLSSTTALMSWTSSQenyNSTIVSVVSLTC-QKQKES 548  

                   e...wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-*
                   ++ +++  t  +++   ++++L+Pg +Y+v ++ ++g   Gp+S   
     bm05625   549 QrleKQYCTQVNSS-KPIIENLVPGAQYQVVIYLRKGPLiGPPS    591  

//