hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-00575876/chunk_1/iprscan-20080808-00575876.nocrc
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Query sequence: bm05625
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00060                                                  47.1    2.3e-09   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00060    1/2     503   588 ..     1    69 []    23.1    0.039
SM00060    2/2     600   686 ..     1    69 []    24.0     0.02

Alignments of top-scoring domains:
SM00060: domain 1 of 2, from 503 to 588: score 23.1, E = 0.039
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP.......ivgYr..
                         P++   ++v+  +st      ++  sW+   +++++ iv+ ++ 
     bm05625   503    TEKPQH---VSVHVLSST------TALMSWTSSqenynstIVSVVsl 540  

                   .......................ytltgLkPgaepwteYefrVrAvngnd
                   + ++++++++ +++  +++++++ ++++L+Pg     +Y++ ++ + g  
     bm05625   541 tcqkqkesqrlekqyctqvnsskPIIENLVPG----AQYQVVIYLRKG-- 584  

                   aGeg<-*
                     +g   
     bm05625   585 PLIG    588  

SM00060: domain 2 of 2, from 600 to 686: score 24.0, E = 0.02
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP........ivgYr.
                      P   ++   l + + ++t       v+lsW++P+ +   +++v+   
     bm05625   600    PTGIKD---LMLYPLGPT------AVVLSWTRPylgvfrkyVVEMFy 637  

                   .........................ytltgLkPgaepwteYefrVrAvng
                    ++ + ++++++  +   +++ + ++++ +L P       Y+frV+ v+ 
     bm05625   638 fnpatmtsewttyyeiaatvsltasVRIANLLPA----WYYNFRVTMVT- 682  

                   ndaGeg<-*
                      G     
     bm05625   683 --WGDP    686  

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