hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-01041346/chunk_1/iprscan-20080808-01041346.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: bm05643
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 189.1    4.2e-52   7
SM00349                                                 144.1    1.4e-38   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00349      1/1      52   112 ..     1    62 []   144.1  1.4e-38
SM00355      1/7     284   306 ..     1    23 []    28.4  0.00097
SM00355      2/7     312   334 ..     1    23 []    29.1  0.00062
SM00355      3/7     340   362 ..     1    23 []    24.1     0.02
SM00355      4/7     368   390 ..     1    23 []    26.2   0.0045
SM00355      5/7     396   418 ..     1    23 []    27.6   0.0017
SM00355      6/7     424   446 ..     1    23 []    28.4    0.001
SM00355      7/7     494   516 ..     1    23 []    25.3   0.0087

Alignments of top-scoring domains:
SM00349: domain 1 of 1, from 52 to 112: score 144.1, E = 1.4e-38
                   *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk
                      VtF+DVAVdF+qEEW+qLDp+Qr+LYRdVMlE++++L S G ++++k
     bm05643    52    VTFRDVAVDFTQEEWGQLDPTQRILYRDVMLETFGHLLSIG-PELPK 97   

                   pdliskLEqgeEpwi<-*
                   p++is+LEqg E+w+   
     bm05643    98 PEVISQLEQGTELWV    112  

SM00355: domain 1 of 7, from 284 to 306: score 28.4, E = 0.00097
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC+  Cgksf++  +L+ H r+H   
     bm05643   284    YKCTD-CGKSFNHNaHLTVHKRIH    306  

SM00355: domain 2 of 7, from 312 to 334: score 29.1, E = 0.00062
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ Cgk fs+ ++L++H r+H   
     bm05643   312    YMCKE-CGKAFSQNsSLVQHERIH    334  

SM00355: domain 3 of 7, from 340 to 362: score 24.1, E = 0.02
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC + Cgksf++ ++L+ H r+H   
     bm05643   340    YKCAE-CGKSFCHStHLTVHRRIH    362  

SM00355: domain 4 of 7, from 368 to 390: score 26.2, E = 0.0045
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C+  Cg+ f++ ++L rH r+H   
     bm05643   368    YECQD-CGRAFNQNsSLGRHKRTH    390  

SM00355: domain 5 of 7, from 396 to 418: score 27.6, E = 0.0017
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgksfs+ + L  H+r+H   
     bm05643   396    YTCSV-CGKSFSRTtCLFLHLRTH    418  

SM00355: domain 6 of 7, from 424 to 446: score 28.4, E = 0.001
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f++ ++L +H+r+H   
     bm05643   424    YECNH-CGKGFRHSsSLAQHQRKH    446  

SM00355: domain 7 of 7, from 494 to 516: score 25.3, E = 0.0087
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC++ Cgk+f + ++L+rH+ +H   
     bm05643   494    FKCNQ-CGKCFIQSsHLIRHQITH    516  

//