hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090416/iprscan-20090416-12042271/chunk_1/iprscan-20090416-12042271.nocrc
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Query sequence: bm05644
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
PF00194.11.ls  Eukaryotic-type carbonic anhydrase       141.3    2.4e-39   1
PF00194.11.fs  Eukaryotic-type carbonic anhydrase       140.9    3.2e-39   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
PF00194.11.ls    1/1      91   360 ..     1   283 []   141.3  2.4e-39
PF00194.11.fs    1/1     122   360 ..    33   283 .]   140.9  3.2e-39

Alignments of top-scoring domains:
PF00194.11.ls: domain 1 of 1, from 91 to 360: score 141.3, E = 2.4e-39
                   *->WgYgehngpehhnna.HvlWhklyPiAnGGnCqGeRQSPInIqtkka
                      W   ++n+  +    + +    l+ +A+     G RQSP++   k +
     bm05644    91    WWSYKDNLQGN--FVpGPPFWGLVNAAWSLCAVGKRQSPVDVELKRV 135  

                   kyDPsLkpLslS.YdaatakefeivNnGHsvqVefdDsddksv.lsGGpL
                    yDP L pL+lS++ ++  +  ++ N+G+  +V+f  + +  v++sGGpL
     bm05644   136 LYDPFLPPLRLStGGEKLRG--TLYNTGR--HVSFLPAPRPVVnVSGGPL 181  

                   paGhpYRLkQfHFHWGGAssddqGSEHTVDGkkYaaELHLVHWNstKYss
                       + RL ++++  G  + d+ GSEH ++   ++aE  L+H N   Y++
     bm05644   182 LY--SHRLSELRLLFG--ARDGAGSEHQINHQGFSAEVQLIHFNQELYGN 227  

                   ykeAvkkpDGLAVlGvFlkvGdykenpglqkvv..DaLdsIktKGksatf
                   +  A+ +p+GLA+l +F+ v   + np l++++++D    I +K     +
     bm05644   228 FSAASRGPNGLAILSLFVNVA-STSNPFLSRLLnrDTITRISYKNDAYFL 276  

                   tnFDPsdLLPseklrDYWTYpGSLTTPPLtEsVtWiVlkePIsvSseQll
                     ++++ L+P+  +  + TY GSL TPP++E VtWi+    + + s Q+ 
     bm05644   277 QDLSLELLFPE--SFGFITYQGSLSTPPCSETVTWILIDRALNITSLQMH 324  

                   kFRsLlfsaegeeevpGCdGimvdNyRPtQPLkgRvVrASF<-*
                    +R L  +      ++     +  N RP+QPL +R  r +    
     bm05644   325 SLRLLSQNPPSQIFQS-----LSGNSRPLQPLAHRALRGNR    360  

PF00194.11.fs: domain 1 of 1, from 122 to 360: score 140.9, E = 3.2e-39
                   *->GeRQSPInIqtkkakyDPsLkpLslS.YdaatakefeivNnGHsvqV
                      G RQSP++   k + yDP L pL+lS++ ++  +  ++ N+G+  +V
     bm05644   122    GKRQSPVDVELKRVLYDPFLPPLRLStGGEKLRG--TLYNTGR--HV 164  

                   efdDsddksv.lsGGpLpaGhpYRLkQfHFHWGGAssddqGSEHTVDGkk
                   +f  + +  v++sGGpL    + RL ++++  G  + d+ GSEH ++   
     bm05644   165 SFLPAPRPVVnVSGGPLLY--SHRLSELRLLFG--ARDGAGSEHQINHQG 210  

                   YaaELHLVHWNstKYssykeAvkkpDGLAVlGvFlkvGdykenpglqkvv
                   ++aE  L+H N   Y+++  A+ +p+GLA+l +F+ v   + np l++++
     bm05644   211 FSAEVQLIHFNQELYGNFSAASRGPNGLAILSLFVNVA-STSNPFLSRLL 259  

                   ..DaLdsIktKGksatftnFDPsdLLPseklrDYWTYpGSLTTPPLtEsV
                   ++D    I +K     +  ++++ L+P+  +  + TY GSL TPP++E V
     bm05644   260 nrDTITRISYKNDAYFLQDLSLELLFPE--SFGFITYQGSLSTPPCSETV 307  

                   tWiVlkePIsvSseQllkFRsLlfsaegeeevpGCdGimvdNyRPtQPLk
                   tWi+    + + s Q+  +R L  +      ++     +  N RP+QPL 
     bm05644   308 TWILIDRALNITSLQMHSLRLLSQNPPSQIFQS-----LSGNSRPLQPLA 352  

                   gRvVrASF<-*
                   +R  r +    
     bm05644   353 HRALRGNR    360  

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