# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Obm05658.fasta.nr -Q bm05658.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 bm05658, 161 aa vs /cdna2/lib/nr/nr library 3071326396 residues in 8985982 sequences statistics sampled from 60000 to 8975029 sequences Expectation_n fit: rho(ln(x))= 5.7518+/-0.000183; mu= 3.6670+/- 0.010 mean_var=77.0845+/-15.358, 0's: 32 Z-trim: 92 B-trim: 2769 in 1/65 Lambda= 0.146080 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(8985982) gi|114677917|ref|XP_512771.2| PREDICTED: similar t ( 270) 1045 228.9 4.8e-58 gi|109125250|ref|XP_001112409.1| PREDICTED: simila ( 163) 1041 228.0 5.6e-58 gi|226887604|pdb|2WEL|D Chain D, Crystal Structure ( 150) 960 210.9 7.2e-53 gi|49037408|sp|P62161.2|CALM_RAT RecName: Full=Cal ( 149) 959 210.7 8.3e-53 gi|60834460|gb|AAX37095.1| calmodulin 2 [synthetic ( 150) 959 210.7 8.4e-53 gi|30583815|gb|AAP36156.1| Homo sapiens calmodulin ( 150) 959 210.7 8.4e-53 gi|126329432|ref|XP_001373765.1| PREDICTED: hypoth ( 217) 961 211.2 8.5e-53 gi|109102865|ref|XP_001113485.1| PREDICTED: simila ( 163) 959 210.7 9e-53 gi|90109258|pdb|2F2O|A Chain A, Structure Of Calmo ( 179) 959 210.7 9.7e-53 gi|74219094|dbj|BAE26689.1| unnamed protein produc ( 197) 957 210.3 1.4e-52 gi|12851157|dbj|BAB28959.1| unnamed protein produc ( 149) 955 209.8 1.5e-52 gi|197129720|gb|ACH46218.1| putative calmodulin va ( 149) 955 209.8 1.5e-52 gi|115509|sp|P02594.2|CALM_ELEEL RecName: Full=Cal ( 149) 955 209.8 1.5e-52 gi|14250065|gb|AAH08437.1| Calmodulin 2 (phosphory ( 149) 955 209.8 1.5e-52 gi|55730374|emb|CAH91909.1| hypothetical protein [ ( 149) 954 209.6 1.7e-52 gi|74220435|dbj|BAE31439.1| unnamed protein produc ( 149) 954 209.6 1.7e-52 gi|146741444|dbj|BAF62378.1| calmodulin 1 [Pan tro ( 149) 954 209.6 1.7e-52 gi|49035521|sp|Q7T3T2.3|CALM_EPIAK RecName: Full=C ( 149) 954 209.6 1.7e-52 gi|49035756|sp|Q9U6D3.3|CALM_MYXGL RecName: Full=C ( 149) 953 209.4 2e-52 gi|225715894|gb|ACO13793.1| Calmodulin [Esox luciu ( 149) 953 209.4 2e-52 gi|74225291|dbj|BAE31579.1| unnamed protein produc ( 149) 953 209.4 2e-52 gi|90079399|dbj|BAE89379.1| unnamed protein produc ( 149) 953 209.4 2e-52 gi|71664|pir||MCON calmodulin - salmon gi|4722 ( 148) 952 209.2 2.3e-52 gi|67971250|dbj|BAE01967.1| unnamed protein produc ( 149) 952 209.2 2.3e-52 gi|47222683|emb|CAG00117.1| unnamed protein produc ( 149) 952 209.2 2.3e-52 gi|74212053|dbj|BAE40191.1| unnamed protein produc ( 149) 952 209.2 2.3e-52 gi|189532998|ref|XP_001919221.1| PREDICTED: simila ( 152) 952 209.2 2.4e-52 gi|126282289|ref|XP_001371508.1| PREDICTED: hypoth ( 155) 952 209.2 2.4e-52 gi|469422|gb|AAA66182.1| calmodulin ( 149) 951 209.0 2.7e-52 gi|3415119|gb|AAC31608.1| calmodulin [Gallus gallu ( 149) 951 209.0 2.7e-52 gi|160358333|ref|NP_001103834.1| calmodulin 1 (pho ( 149) 951 209.0 2.7e-52 gi|109084655|ref|XP_001087048.1| PREDICTED: simila ( 209) 952 209.3 3.1e-52 gi|74143933|dbj|BAE41271.1| unnamed protein produc ( 149) 950 208.8 3.1e-52 gi|225705524|gb|ACO08608.1| Calmodulin [Oncorhynch ( 149) 950 208.8 3.1e-52 gi|197129719|gb|ACH46217.1| putative calmodulin va ( 149) 950 208.8 3.1e-52 gi|56758390|gb|AAW27335.1| unknown [Schistosoma ja ( 149) 950 208.8 3.1e-52 gi|197129747|gb|ACH46245.1| putative calmodulin va ( 149) 950 208.8 3.1e-52 gi|223647230|gb|ACN10373.1| Calmodulin [Salmo sala ( 149) 950 208.8 3.1e-52 gi|194671098|ref|XP_874377.3| PREDICTED: similar t ( 182) 951 209.0 3.2e-52 gi|194215657|ref|XP_001500896.2| PREDICTED: simila ( 224) 952 209.3 3.3e-52 gi|119912985|ref|XP_001250669.1| PREDICTED: calmod ( 149) 949 208.5 3.6e-52 gi|197129717|gb|ACH46215.1| putative calmodulin va ( 149) 948 208.3 4.2e-52 gi|189055073|dbj|BAG38057.1| unnamed protein produ ( 149) 948 208.3 4.2e-52 gi|224983343|pdb|2K0J|A Chain A, Solution Structur ( 148) 947 208.1 4.8e-52 gi|67970752|dbj|BAE01718.1| unnamed protein produc ( 149) 947 208.1 4.8e-52 gi|122063218|sp|P21251.2|CALM_STIJA RecName: Full= ( 149) 947 208.1 4.8e-52 gi|640285|pdb|1CDL|A Chain A, Target Enzyme Recogn ( 147) 946 207.9 5.5e-52 gi|157830843|pdb|1DMO|A Chain A, Calmodulin, Nmr, ( 148) 946 207.9 5.5e-52 gi|49066052|sp|Q95NR9.3|CALM_METSE RecName: Full=C ( 149) 946 207.9 5.6e-52 gi|62738073|pdb|1UP5|A Chain A, Chicken Calmodulin ( 148) 945 207.7 6.4e-52 >>gi|114677917|ref|XP_512771.2| PREDICTED: similar to ca (270 aa) initn: 1045 init1: 1045 opt: 1045 Z-score: 1199.4 bits: 228.9 E(): 4.8e-58 Smith-Waterman score: 1045; 100.000% identity (100.000% similar) in 161 aa overlap (1-161:110-270) 10 20 30 bm0565 LDPRAPDTPGLAMADQLTEEQIAEFKEAFS :::::::::::::::::::::::::::::: gi|114 AAARAAGSECGGADARRSWNCCSCCRRRRNLDPRAPDTPGLAMADQLTEEQIAEFKEAFS 80 90 100 110 120 130 40 50 60 70 80 90 bm0565 LFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMK 140 150 160 170 180 190 100 110 120 130 140 150 bm0565 DTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 DTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN 200 210 220 230 240 250 160 bm0565 YEEFVQMMTAK ::::::::::: gi|114 YEEFVQMMTAK 260 270 >>gi|109125250|ref|XP_001112409.1| PREDICTED: similar to (163 aa) initn: 1041 init1: 1041 opt: 1041 Z-score: 1198.1 bits: 228.0 E(): 5.6e-58 Smith-Waterman score: 1041; 99.379% identity (100.000% similar) in 161 aa overlap (1-161:3-163) 10 20 30 40 50 bm0565 LDPRAPDTPGLAMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTE ::::::::::::.::::::::::::::::::::::::::::::::::::::::::::: gi|109 MNLDPRAPDTPGLALADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTE 10 20 30 40 50 60 60 70 80 90 100 110 bm0565 AELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 AELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAEL 70 80 90 100 110 120 120 130 140 150 160 bm0565 RHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK ::::::::::::::::::::::::::::::::::::::::::: gi|109 RHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 130 140 150 160 >>gi|226887604|pdb|2WEL|D Chain D, Crystal Structure Of (150 aa) initn: 960 init1: 960 opt: 960 Z-score: 1106.4 bits: 210.9 E(): 7.2e-53 Smith-Waterman score: 960; 99.333% identity (100.000% similar) in 150 aa overlap (12-161:1-150) 10 20 30 40 50 60 bm0565 LDPRAPDTPGLAMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE .:::::::::::::::::::::::::::::::::::::::::::::::: gi|226 SMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE 10 20 30 40 70 80 90 100 110 120 bm0565 LQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|226 LQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRH 50 60 70 80 90 100 130 140 150 160 bm0565 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK ::::::::::::::::::::::::::::::::::::::::: gi|226 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 110 120 130 140 150 >>gi|49037408|sp|P62161.2|CALM_RAT RecName: Full=Calmodu (149 aa) initn: 959 init1: 959 opt: 959 Z-score: 1105.3 bits: 210.7 E(): 8.3e-53 Smith-Waterman score: 959; 100.000% identity (100.000% similar) in 149 aa overlap (13-161:1-149) 10 20 30 40 50 60 bm0565 LDPRAPDTPGLAMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE :::::::::::::::::::::::::::::::::::::::::::::::: gi|490 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE 10 20 30 40 70 80 90 100 110 120 bm0565 LQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|490 LQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRH 50 60 70 80 90 100 130 140 150 160 bm0565 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK ::::::::::::::::::::::::::::::::::::::::: gi|490 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 110 120 130 140 >>gi|60834460|gb|AAX37095.1| calmodulin 2 [synthetic con (150 aa) initn: 959 init1: 959 opt: 959 Z-score: 1105.3 bits: 210.7 E(): 8.4e-53 Smith-Waterman score: 959; 100.000% identity (100.000% similar) in 149 aa overlap (13-161:1-149) 10 20 30 40 50 60 bm0565 LDPRAPDTPGLAMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE :::::::::::::::::::::::::::::::::::::::::::::::: gi|608 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE 10 20 30 40 70 80 90 100 110 120 bm0565 LQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|608 LQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRH 50 60 70 80 90 100 130 140 150 160 bm0565 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK ::::::::::::::::::::::::::::::::::::::::: gi|608 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAKD 110 120 130 140 150 >>gi|30583815|gb|AAP36156.1| Homo sapiens calmodulin 1 ( (150 aa) initn: 959 init1: 959 opt: 959 Z-score: 1105.3 bits: 210.7 E(): 8.4e-53 Smith-Waterman score: 959; 100.000% identity (100.000% similar) in 149 aa overlap (13-161:1-149) 10 20 30 40 50 60 bm0565 LDPRAPDTPGLAMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE :::::::::::::::::::::::::::::::::::::::::::::::: gi|305 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE 10 20 30 40 70 80 90 100 110 120 bm0565 LQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 LQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRH 50 60 70 80 90 100 130 140 150 160 bm0565 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK ::::::::::::::::::::::::::::::::::::::::: gi|305 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAKL 110 120 130 140 150 >>gi|126329432|ref|XP_001373765.1| PREDICTED: hypothetic (217 aa) initn: 955 init1: 955 opt: 961 Z-score: 1105.1 bits: 211.2 E(): 8.5e-53 Smith-Waterman score: 961; 97.419% identity (98.710% similar) in 155 aa overlap (8-161:63-217) 10 20 30 bm0565 LDPRAPDTPGLAM-ADQLTEEQIAEFKEAFSLFDKDG .:.:: ::::::::::::::::::::::: gi|126 GSPSGGFSPTGPPPALPHPRPQTDHQQSAGSPSLAASADQLTEEQIAEFKEAFSLFDKDG 40 50 60 70 80 90 40 50 60 70 80 90 bm0565 DGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 DGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEE 100 110 120 130 140 150 100 110 120 130 140 150 bm0565 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQ 160 170 180 190 200 210 160 bm0565 MMTAK ::::: gi|126 MMTAK >>gi|109102865|ref|XP_001113485.1| PREDICTED: similar to (163 aa) initn: 954 init1: 954 opt: 959 Z-score: 1104.7 bits: 210.7 E(): 9e-53 Smith-Waterman score: 959; 93.750% identity (96.875% similar) in 160 aa overlap (4-161:4-163) 10 20 30 40 50 bm0565 LDPRAPDTPG--LAMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTE . : :. ...::::::::::::::::::::::::::::::::::::::::::::: gi|109 MARKRPGMPATVVSQADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTE 10 20 30 40 50 60 60 70 80 90 100 110 bm0565 AELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 AELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAEL 70 80 90 100 110 120 120 130 140 150 160 bm0565 RHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK ::::::::::::::::::::::::::::::::::::::::::: gi|109 RHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 130 140 150 160 >>gi|90109258|pdb|2F2O|A Chain A, Structure Of Calmoduli (179 aa) initn: 959 init1: 959 opt: 959 Z-score: 1104.1 bits: 210.7 E(): 9.7e-53 Smith-Waterman score: 959; 100.000% identity (100.000% similar) in 149 aa overlap (13-161:1-149) 10 20 30 40 50 60 bm0565 LDPRAPDTPGLAMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE :::::::::::::::::::::::::::::::::::::::::::::::: gi|901 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE 10 20 30 40 70 80 90 100 110 120 bm0565 LQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|901 LQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRH 50 60 70 80 90 100 130 140 150 160 bm0565 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK ::::::::::::::::::::::::::::::::::::::::: gi|901 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAKGGGGGAAARKEVIRNKIRA 110 120 130 140 150 160 gi|901 IGKMARVFSVL 170 >>gi|74219094|dbj|BAE26689.1| unnamed protein product [M (197 aa) initn: 954 init1: 954 opt: 957 Z-score: 1101.2 bits: 210.3 E(): 1.4e-52 Smith-Waterman score: 957; 94.969% identity (94.969% similar) in 159 aa overlap (3-161:39-197) 10 20 30 bm0565 LDPRAPDTPGLAMADQLTEEQIAEFKEAFSLF : : : ::::::::::::::::::: gi|742 VQGLDRGLGVSSATFRPPDQPSRESPLACGPLLPPGGRGAGADQLTEEQIAEFKEAFSLF 10 20 30 40 50 60 40 50 60 70 80 90 bm0565 DKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 DKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDT 70 80 90 100 110 120 100 110 120 130 140 150 bm0565 DSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 DSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 130 140 150 160 170 180 160 bm0565 EFVQMMTAK ::::::::: gi|742 EFVQMMTAK 190 161 residues in 1 query sequences 3071326396 residues in 8985982 library sequences Tcomplib [34.26] (8 proc) start: Thu Jun 18 01:12:15 2009 done: Thu Jun 18 01:16:07 2009 Total Scan time: 764.400 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]