hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090416/iprscan-20090416-12104049/chunk_1/iprscan-20090416-12104049.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bm05720 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00702.16.fs haloacid dehalogenase-like hydrolase 39.4 6.3e-11 1 PF00702.16.ls haloacid dehalogenase-like hydrolase 41.3 3e-09 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00702.16.fs 1/1 65 288 .. 1 183 [] 39.4 6.3e-11 PF00702.16.ls 1/1 65 288 .. 1 183 [] 41.3 3e-09 Alignments of top-scoring domains: PF00702.16.fs: domain 1 of 1, from 65 to 288: score 39.4, E = 6.3e-11 *->ikavvFDkDGTLtdgkeppiaeaiveaaaelgl.....lpleevekl + ++++D+ GT t +++ ++++ +++ ++++ +ee + bm05720 65 VTVILLDIEGTTTPI-AFVKDILFPYIEENVKEylqthWEEEECQQD 110 lgrgl.g..erilleggltaell........................... + ++ +e+++l+g++ ++++++++ ++ ++ + ++ bm05720 111 VSLLRkQaeEDAHLDGAVPIPAAsgngvddlqqmiqavvdnvcwqmsldr 160 ............d.evlglial.dklypgarealkaLkrrGikvailTgg +++ + ++ ++ ++ ++ + + + ++++a+++++++G kv+i ++g bm05720 161 kttalkqlqghmWrAAFTAGRMkAEFFADVVPAVRKWREAGMKVYIYSSG 210 drnaeallealgla.lfdviidsdevggvgpivvgKPkpeifllalerlg + a++ll + + + ++d+++ + +i+ K + e ++++++ g bm05720 211 SVEAQKLLFGHSTEgDILELVDGHFDT---KIG-HKVESESYRKIADSIG 256 vkpeevgpevlmVGDgvnDapalaaAGvgvamgngg<-* + ++ l+ D a a++ A+v va + ++ bm05720 257 CSTNNI----LFLTDVTREASAAEEADVHVAVVVRP 288 PF00702.16.ls: domain 1 of 1, from 65 to 288: score 41.3, E = 3e-09 *->ikavvFDkDGTLtdgkeppiaeaiveaaaelgl.....lpleevekl + ++++D+ GT t +++ ++++ +++ ++++ +ee + bm05720 65 VTVILLDIEGTTTPI-AFVKDILFPYIEENVKEylqthWEEEECQQD 110 lgrgl.g..erilleggltaell........................... + ++ +e+++l+g++ ++++++++ ++ ++ + ++ bm05720 111 VSLLRkQaeEDAHLDGAVPIPAAsgngvddlqqmiqavvdnvcwqmsldr 160 ............d.evlglial.dklypgarealkaLkrrGikvailTgg +++ + ++ ++ ++ ++ + + + ++++a+++++++G kv+i ++g bm05720 161 kttalkqlqghmWrAAFTAGRMkAEFFADVVPAVRKWREAGMKVYIYSSG 210 drnaeallealgla.lfdviidsdevggvgpivvgKPkpeifllalerlg + a++ll + + + ++d+++ + +i+ K + e ++++++ g bm05720 211 SVEAQKLLFGHSTEgDILELVDGHFDT---KIG-HKVESESYRKIADSIG 256 vkpeevgpevlmVGDgvnDapalaaAGvgvamgngg<-* + ++ l+ D a a++ A+v va + ++ bm05720 257 CSTNNI----LFLTDVTREASAAEEADVHVAVVVRP 288 //