# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Obm05725.fasta.nr -Q bm05725.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 bm05725, 116 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6824763 sequences Expectation_n fit: rho(ln(x))= 4.9931+/-0.000184; mu= 6.5109+/- 0.010 mean_var=68.9959+/-13.855, 0's: 40 Z-trim: 40 B-trim: 3035 in 1/64 Lambda= 0.154405 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|13633990|sp|Q9NQE7|TSSP_HUMAN Thymus-specific s ( 514) 639 150.6 1.8e-34 gi|8574032|emb|CAB94769.1| protease, serine, 16 (t ( 541) 639 150.7 1.9e-34 gi|114605980|ref|XP_518296.2| PREDICTED: protease, ( 454) 633 149.3 4.2e-34 gi|114605978|ref|XP_001136226.1| PREDICTED: protea ( 514) 633 149.3 4.6e-34 gi|114605976|ref|XP_001136145.1| PREDICTED: protea ( 541) 633 149.3 4.8e-34 gi|109070010|ref|XP_001093476.1| PREDICTED: protea ( 454) 594 140.6 1.7e-31 gi|109070008|ref|XP_001094051.1| PREDICTED: protea ( 514) 594 140.6 1.9e-31 gi|149029312|gb|EDL84579.1| protease, serine, 16 ( ( 294) 500 119.5 2.5e-25 gi|74004232|ref|XP_545414.2| PREDICTED: similar to ( 521) 494 118.4 9.7e-25 gi|148700667|gb|EDL32614.1| protease, serine, 16 ( ( 475) 478 114.8 1.1e-23 gi|148700668|gb|EDL32615.1| protease, serine, 16 ( ( 493) 478 114.8 1.1e-23 gi|13633993|sp|Q9QXE5|TSSP_MOUSE Thymus-specific s ( 509) 478 114.8 1.1e-23 gi|149029309|gb|EDL84576.1| protease, serine, 16 ( ( 454) 467 112.3 5.7e-23 gi|149029310|gb|EDL84577.1| protease, serine, 16 ( ( 496) 467 112.3 6.1e-23 gi|75775148|gb|AAI04723.1| Protease, serine, 16 (t ( 512) 467 112.3 6.2e-23 gi|162287351|ref|NP_001069798.2| protease, serine, ( 516) 441 106.5 3.5e-21 gi|126329390|ref|XP_001372314.1| PREDICTED: simila ( 552) 298 74.7 1.4e-11 >>gi|13633990|sp|Q9NQE7|TSSP_HUMAN Thymus-specific serin (514 aa) initn: 661 init1: 639 opt: 639 Z-score: 773.9 bits: 150.6 E(): 1.8e-34 Smith-Waterman score: 639; 98.980% identity (100.000% similar) in 98 aa overlap (11-108:239-336) 10 20 30 40 bm0572 VLADIASCFPQCRAAVSVAFAEVERRLRSGGAAQAALRTE .::::::::::::::::::::::::::::: gi|136 SAPVRAVLDFSEYNDVVSRSLMSTAIGGSLECRAAVSVAFAEVERRLRSGGAAQAALRTE 210 220 230 240 250 260 50 60 70 80 90 100 bm0572 LSACGPLGRAENQAELLGALQALVGGVVQYDGQTGAPLSVRQLCGLLLGGGGNRSHSTPY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|136 LSACGPLGRAENQAELLGALQALVGGVVQYDGQTGAPLSVRQLCGLLLGGGGNRSHSTPY 270 280 290 300 310 320 110 bm0572 CGLRRAVQGTQTPGMC :::::::: gi|136 CGLRRAVQIVLHSLGQKCLSFSRAETVAQLRSTEPQLSGVGDRQWLYQTCTEFGFYVTCE 330 340 350 360 370 380 >>gi|8574032|emb|CAB94769.1| protease, serine, 16 (thymu (541 aa) initn: 661 init1: 639 opt: 639 Z-score: 773.6 bits: 150.7 E(): 1.9e-34 Smith-Waterman score: 639; 98.980% identity (100.000% similar) in 98 aa overlap (11-108:266-363) 10 20 30 40 bm0572 VLADIASCFPQCRAAVSVAFAEVERRLRSGGAAQAALRTE .::::::::::::::::::::::::::::: gi|857 SAPVRAVLDFSEYNDVVSRSLMSTAIGGSLECRAAVSVAFAEVERRLRSGGAAQAALRTE 240 250 260 270 280 290 50 60 70 80 90 100 bm0572 LSACGPLGRAENQAELLGALQALVGGVVQYDGQTGAPLSVRQLCGLLLGGGGNRSHSTPY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|857 LSACGPLGRAENQAELLGALQALVGGVVQYDGQTGAPLSVRQLCGLLLGGGGNRSHSTPY 300 310 320 330 340 350 110 bm0572 CGLRRAVQGTQTPGMC :::::::: gi|857 CGLRRAVQIVLHSLGQKCLSFSRAETVAQLRSTEPQLSGVGDRQWLYQTCTEFGFYVTCE 360 370 380 390 400 410 >>gi|114605980|ref|XP_518296.2| PREDICTED: protease, ser (454 aa) initn: 633 init1: 633 opt: 633 Z-score: 767.4 bits: 149.3 E(): 4.2e-34 Smith-Waterman score: 633; 97.959% identity (100.000% similar) in 98 aa overlap (11-108:239-336) 10 20 30 40 bm0572 VLADIASCFPQCRAAVSVAFAEVERRLRSGGAAQAALRTE .::::::::::::::::::::::::::.:: gi|114 SAPVRAVLDFSEYNDVVSRSLMSTAIGGSLECRAAVSVAFAEVERRLRSGGAAQAALQTE 210 220 230 240 250 260 50 60 70 80 90 100 bm0572 LSACGPLGRAENQAELLGALQALVGGVVQYDGQTGAPLSVRQLCGLLLGGGGNRSHSTPY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LSACGPLGRAENQAELLGALQALVGGVVQYDGQTGAPLSVRQLCGLLLGGGGNRSHSTPY 270 280 290 300 310 320 110 bm0572 CGLRRAVQGTQTPGMC :::::::: gi|114 CGLRRAVQIVLHSLGQKCLSFSRAETVAQLRSTEPQLSGVGDRQWLYQTCTEFGFWDTDP 330 340 350 360 370 380 >>gi|114605978|ref|XP_001136226.1| PREDICTED: protease, (514 aa) initn: 655 init1: 633 opt: 633 Z-score: 766.7 bits: 149.3 E(): 4.6e-34 Smith-Waterman score: 633; 97.959% identity (100.000% similar) in 98 aa overlap (11-108:239-336) 10 20 30 40 bm0572 VLADIASCFPQCRAAVSVAFAEVERRLRSGGAAQAALRTE .::::::::::::::::::::::::::.:: gi|114 SAPVRAVLDFSEYNDVVSRSLMSTAIGGSLECRAAVSVAFAEVERRLRSGGAAQAALQTE 210 220 230 240 250 260 50 60 70 80 90 100 bm0572 LSACGPLGRAENQAELLGALQALVGGVVQYDGQTGAPLSVRQLCGLLLGGGGNRSHSTPY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LSACGPLGRAENQAELLGALQALVGGVVQYDGQTGAPLSVRQLCGLLLGGGGNRSHSTPY 270 280 290 300 310 320 110 bm0572 CGLRRAVQGTQTPGMC :::::::: gi|114 CGLRRAVQIVLHSLGQKCLSFSRAETVAQLRSTEPQLSGVGDRQWLYQTCTEFGFYVTCE 330 340 350 360 370 380 >>gi|114605976|ref|XP_001136145.1| PREDICTED: protease, (541 aa) initn: 655 init1: 633 opt: 633 Z-score: 766.4 bits: 149.3 E(): 4.8e-34 Smith-Waterman score: 633; 97.959% identity (100.000% similar) in 98 aa overlap (11-108:266-363) 10 20 30 40 bm0572 VLADIASCFPQCRAAVSVAFAEVERRLRSGGAAQAALRTE .::::::::::::::::::::::::::.:: gi|114 SAPVRAVLDFSEYNDVVSRSLMSTAIGGSLECRAAVSVAFAEVERRLRSGGAAQAALQTE 240 250 260 270 280 290 50 60 70 80 90 100 bm0572 LSACGPLGRAENQAELLGALQALVGGVVQYDGQTGAPLSVRQLCGLLLGGGGNRSHSTPY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LSACGPLGRAENQAELLGALQALVGGVVQYDGQTGAPLSVRQLCGLLLGGGGNRSHSTPY 300 310 320 330 340 350 110 bm0572 CGLRRAVQGTQTPGMC :::::::: gi|114 CGLRRAVQIVLHSLGQKCLSFSRAETVAQLRSTEPQLSGVGDRQWLYQTCTEFGFYVTCE 360 370 380 390 400 410 >>gi|109070010|ref|XP_001093476.1| PREDICTED: protease, (454 aa) initn: 594 init1: 594 opt: 594 Z-score: 720.5 bits: 140.6 E(): 1.7e-31 Smith-Waterman score: 594; 91.837% identity (96.939% similar) in 98 aa overlap (11-108:239-336) 10 20 30 40 bm0572 VLADIASCFPQCRAAVSVAFAEVERRLRSGGAAQAALRTE .::::::.:::::::::: :::::::::.: gi|109 SAPVRAVLDFSEYNDVVSRSLMSTAIGGSLECRAAVSAAFAEVERRLRLGGAAQAALRSE 210 220 230 240 250 260 50 60 70 80 90 100 bm0572 LSACGPLGRAENQAELLGALQALVGGVVQYDGQTGAPLSVRQLCGLLLGGGGNRSHSTPY ::::: :: :::::::::::::::::.::::::.:::::::::::::::::::::::::: gi|109 LSACGTLGSAENQAELLGALQALVGGAVQYDGQAGAPLSVRQLCGLLLGGGGNRSHSTPY 270 280 290 300 310 320 110 bm0572 CGLRRAVQGTQTPGMC :::::::: gi|109 CGLRRAVQIVLHSLGQKCLSFSRAETVAQLRSTEPQLSGVGDRQWLYQTCTEFGFWDTDP 330 340 350 360 370 380 >>gi|109070008|ref|XP_001094051.1| PREDICTED: protease, (514 aa) initn: 616 init1: 594 opt: 594 Z-score: 719.8 bits: 140.6 E(): 1.9e-31 Smith-Waterman score: 594; 91.837% identity (96.939% similar) in 98 aa overlap (11-108:239-336) 10 20 30 40 bm0572 VLADIASCFPQCRAAVSVAFAEVERRLRSGGAAQAALRTE .::::::.:::::::::: :::::::::.: gi|109 SAPVRAVLDFSEYNDVVSRSLMSTAIGGSLECRAAVSAAFAEVERRLRLGGAAQAALRSE 210 220 230 240 250 260 50 60 70 80 90 100 bm0572 LSACGPLGRAENQAELLGALQALVGGVVQYDGQTGAPLSVRQLCGLLLGGGGNRSHSTPY ::::: :: :::::::::::::::::.::::::.:::::::::::::::::::::::::: gi|109 LSACGTLGSAENQAELLGALQALVGGAVQYDGQAGAPLSVRQLCGLLLGGGGNRSHSTPY 270 280 290 300 310 320 110 bm0572 CGLRRAVQGTQTPGMC :::::::: gi|109 CGLRRAVQIVLHSLGQKCLSFSRAETVAQLRSTEPQLSGVGDRQWLYQTCTEFGFYVTCG 330 340 350 360 370 380 >>gi|149029312|gb|EDL84579.1| protease, serine, 16 (thym (294 aa) initn: 500 init1: 500 opt: 500 Z-score: 609.9 bits: 119.5 E(): 2.5e-25 Smith-Waterman score: 500; 74.528% identity (87.736% similar) in 106 aa overlap (3-108:12-117) 10 20 30 40 50 bm0572 VLADIASCFPQCRAAVSVAFAEVERRLRSGGAAQAALRTELSACGPLGRAE :..:: ::.: ::.:.::::::: ::.: :.::.:: ::.::: : : gi|149 MFQRRKIRPFPANLASRFPKCLAAASTAFAEVERLLRAGLASQAVLREELGACGSLDLIE 10 20 30 40 50 60 60 70 80 90 100 110 bm0572 NQAELLGALQALVGGVVQYDGQTGAPLSVRQLCGLLLGGGGNRSHSTPYCGLRRAVQGTQ .::::::::::::::.::::::.:.:::::::::::: :::.::::: ::::::: gi|149 DQAELLGALQALVGGTVQYDGQAGSPLSVRQLCGLLLRTWGNRNHSTPYLGLRRAVQRVL 70 80 90 100 110 120 bm0572 TPGMC gi|149 RSMGQKCLSSSRAETVAQLRNTEPQVSGVGDRQWLYQTCTEFGFYVTCEGLQCPFSQLPA 130 140 150 160 170 180 >>gi|74004232|ref|XP_545414.2| PREDICTED: similar to Thy (521 aa) initn: 516 init1: 494 opt: 494 Z-score: 599.3 bits: 118.4 E(): 9.7e-25 Smith-Waterman score: 494; 76.000% identity (95.000% similar) in 100 aa overlap (9-108:244-343) 10 20 30 bm0572 VLADIASCFPQCRAAVSVAFAEVERRLRSGGAAQAALR .::::::.:.:::::::::..:::...::: gi|740 LDFSEYNEVRGSGRQVHAVLGGGLRPRGVSLPQCRAAASAAFAEVERRLHAGGATRSALR 220 230 240 250 260 270 40 50 60 70 80 90 bm0572 TELSACGPLGRAENQAELLGALQALVGGVVQYDGQTGAPLSVRQLCGLLLGGGGNRSHST .::.::.:: :::.::::::::::::::.::::.:.:.::::: :::::: : .:::.:. gi|740 AELGACSPLDRAEDQAELLGALQALVGGAVQYDAQAGVPLSVRGLCGLLLEGRSNRSRSA 280 290 300 310 320 330 100 110 bm0572 PYCGLRRAVQGTQTPGMC :: ::::::: gi|740 PYHGLRRAVQVVMHSLGQRCLSFSRAETVAQLKVTDSQVSGVGDRQWLYQTCTEFGFYIT 340 350 360 370 380 390 >>gi|148700667|gb|EDL32614.1| protease, serine, 16 (thym (475 aa) initn: 478 init1: 478 opt: 478 Z-score: 580.6 bits: 114.8 E(): 1.1e-23 Smith-Waterman score: 478; 77.551% identity (89.796% similar) in 98 aa overlap (11-108:238-335) 10 20 30 40 bm0572 VLADIASCFPQCRAAVSVAFAEVERRLRSGGAAQAALRTE .: ::.:.::.:::: ::.: ::::.:: : gi|148 SAPLSAVVDFSAYNQVVARSLTQVAIGGSLECLAAASTAFTEVERLLRAGPAAQAVLREE 210 220 230 240 250 260 50 60 70 80 90 100 bm0572 LSACGPLGRAENQAELLGALQALVGGVVQYDGQTGAPLSVRQLCGLLLGGGGNRSHSTPY :.::: : .:.::::::::::::::.::::::.::::::::::::::: ::::.:::: gi|148 LGACGSLDLTEDQAELLGALQALVGGTVQYDGQAGAPLSVRQLCGLLLGKWGNRSRSTPY 270 280 290 300 310 320 110 bm0572 CGLRRAVQGTQTPGMC ::::::: gi|148 LGLRRAVQIVLRSMGQKCLSFSRAETVAQLSNTEPQVSGVGDRQWLYQTCTEFGFYVTCE 330 340 350 360 370 380 116 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Fri Aug 8 01:27:36 2008 done: Fri Aug 8 01:30:39 2008 Total Scan time: 526.670 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]