# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Obm05752.fasta.nr -Q bm05752.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 bm05752, 155 aa vs /cdna2/lib/nr/nr library 3020366983 residues in 8842601 sequences statistics sampled from 60000 to 8837687 sequences Expectation_n fit: rho(ln(x))= 4.7859+/-0.000182; mu= 8.7322+/- 0.010 mean_var=60.4933+/-11.791, 0's: 34 Z-trim: 61 B-trim: 2 in 1/64 Lambda= 0.164900 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(8842601) gi|46577315|sp|P61079.1|UB2D3_MOUSE RecName: Full= ( 147) 1036 254.0 6.9e-66 gi|66360405|pdb|1X23|A Chain A, Crystal Structure ( 155) 1036 254.0 7.2e-66 gi|44890748|gb|AAH66917.1| Ubiquitin-conjugating e ( 147) 1033 253.3 1.1e-65 gi|126321038|ref|XP_001367781.1| PREDICTED: simila ( 147) 1033 253.3 1.1e-65 gi|74142433|dbj|BAE31970.1| unnamed protein produc ( 147) 1031 252.8 1.6e-65 gi|48145949|emb|CAG33197.1| UBE2D3 [Homo sapiens] ( 147) 1030 252.6 1.9e-65 gi|93279754|pdb|2FUH|A Chain A, Solution Structure ( 146) 1029 252.3 2.2e-65 gi|12833659|dbj|BAB22614.1| unnamed protein produc ( 147) 1027 251.9 3e-65 gi|110288000|sp|Q3ZCF7.1|UB2D3_BOVIN RecName: Full ( 147) 1027 251.9 3e-65 gi|114600875|ref|XP_517826.2| PREDICTED: similar t ( 147) 1026 251.6 3.6e-65 gi|121957312|sp|Q06AA9.1|UB2D2_PIG RecName: Full=U ( 147) 1026 251.6 3.6e-65 gi|21755161|dbj|BAC04632.1| unnamed protein produc ( 148) 1024 251.2 5e-65 gi|198443360|pdb|3EB6|B Chain B, Structure Of The ( 149) 1018 249.7 1.4e-64 gi|119389041|pdb|2C4O|B Chain B, Crystal Structure ( 165) 1018 249.8 1.5e-64 gi|51338680|sp|P62839.1|UB2D2_RAT RecName: Full=Ub ( 147) 1016 249.3 1.9e-64 gi|83754945|pdb|2ESK|A Chain A, Human Ubiquitin-Co ( 149) 1016 249.3 1.9e-64 gi|765056|gb|AAC41750.1| ubiquitin conjugating enz ( 147) 1012 248.3 3.6e-64 gi|83754950|pdb|2ESQ|A Chain A, Human Ubiquitin-Co ( 149) 1011 248.1 4.3e-64 gi|83754949|pdb|2ESP|A Chain A, Human Ubiquitin-Co ( 149) 1010 247.8 5.1e-64 gi|83754948|pdb|2ESO|A Chain A, Human Ubiquitin-Co ( 149) 1010 247.8 5.1e-64 gi|29124433|gb|AAH48896.1| Zgc:55886 protein [Dani ( 147) 1009 247.6 5.9e-64 gi|225715466|gb|ACO13579.1| Ubiquitin-conjugating ( 147) 1008 247.4 7e-64 gi|126331020|ref|XP_001368675.1| PREDICTED: simila ( 147) 1005 246.6 1.1e-63 gi|12843975|dbj|BAB26188.1| unnamed protein produc ( 147) 1005 246.6 1.1e-63 gi|221221252|gb|ACM09287.1| Ubiquitin-conjugating ( 147) 1004 246.4 1.3e-63 gi|221220484|gb|ACM08903.1| Ubiquitin-conjugating ( 147) 1004 246.4 1.3e-63 gi|119389040|pdb|2C4O|A Chain A, Crystal Structure ( 165) 1003 246.2 1.7e-63 gi|37589809|gb|AAH59548.1| Ubiquitin-conjugating e ( 147) 1000 245.4 2.6e-63 gi|221220092|gb|ACM08707.1| Ubiquitin-conjugating ( 147) 999 245.2 3.1e-63 gi|119626548|gb|EAX06143.1| ubiquitin-conjugating ( 149) 999 245.2 3.1e-63 gi|225706610|gb|ACO09151.1| Ubiquitin-conjugating ( 147) 997 244.7 4.3e-63 gi|28839823|gb|AAH47863.1| Zgc:56340 [Danio rerio] ( 147) 996 244.5 5e-63 gi|197631801|gb|ACH70624.1| ubiquitin-conjugating ( 148) 994 244.0 7.1e-63 gi|119927625|ref|XP_001250125.1| PREDICTED: simila ( 147) 992 243.5 9.8e-63 gi|51472295|gb|AAU04541.1| ubiquitin-conjugating e ( 147) 990 243.1 1.4e-62 gi|136643|sp|P25867.1|UBCD1_DROME RecName: Full=Ub ( 147) 987 242.4 2.2e-62 gi|224068238|ref|XP_002190685.1| PREDICTED: ubiqui ( 174) 985 241.9 3.5e-62 gi|110755935|ref|XP_001120139.1| PREDICTED: simila ( 147) 984 241.6 3.7e-62 gi|87239726|emb|CAJ57642.1| putative ubiquitin con ( 147) 984 241.6 3.7e-62 gi|161612226|gb|AAI55783.1| Zgc:56340 protein [Dan ( 148) 984 241.6 3.7e-62 gi|119936686|ref|XP_001249764.1| PREDICTED: simila ( 147) 982 241.2 5.1e-62 gi|158599999|gb|EDP37374.1| ubiquitin-conjugating ( 147) 980 240.7 7.1e-62 gi|74753478|sp|Q9Y2X8.1|UB2D4_HUMAN RecName: Full= ( 147) 980 240.7 7.1e-62 gi|74752963|sp|Q9NTT1.1|U2D3L_HUMAN Putative ubiqu ( 147) 978 240.2 9.8e-62 gi|464979|sp|P35129.1|UBC2_CAEEL RecName: Full=Ubi ( 147) 978 240.2 9.8e-62 gi|87239724|emb|CAJ57641.1| putative ubiquitin con ( 147) 978 240.2 9.8e-62 gi|62738886|pdb|1Z2U|A Chain A, The 1.1a Crystallo ( 150) 978 240.2 1e-61 gi|126290717|ref|XP_001376552.1| PREDICTED: simila ( 270) 980 240.9 1.1e-61 gi|141795523|gb|AAI39560.1| Zgc:162263 protein [Da ( 147) 974 239.3 1.9e-61 gi|168177064|pdb|2OXQ|A Chain A, Structure Of The ( 152) 974 239.3 1.9e-61 >>gi|46577315|sp|P61079.1|UB2D3_MOUSE RecName: Full=Ubiq (147 aa) initn: 1036 init1: 1036 opt: 1036 Z-score: 1340.1 bits: 254.0 E(): 6.9e-66 Smith-Waterman score: 1036; 100.000% identity (100.000% similar) in 147 aa overlap (9-155:1-147) 10 20 30 40 50 60 bm0575 GARRQAHTMALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFL :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|465 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFL 10 20 30 40 50 70 80 90 100 110 120 bm0575 TIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|465 TIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCD 60 70 80 90 100 110 130 140 150 bm0575 PNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM ::::::::::::::::::::::::::::::::::: gi|465 PNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM 120 130 140 >>gi|66360405|pdb|1X23|A Chain A, Crystal Structure Of U (155 aa) initn: 1036 init1: 1036 opt: 1036 Z-score: 1339.7 bits: 254.0 E(): 7.2e-66 Smith-Waterman score: 1036; 100.000% identity (100.000% similar) in 147 aa overlap (9-155:9-155) 10 20 30 40 50 60 bm0575 GARRQAHTMALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFL :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|663 GPLGSPEFMALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFL 10 20 30 40 50 60 70 80 90 100 110 120 bm0575 TIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|663 TIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCD 70 80 90 100 110 120 130 140 150 bm0575 PNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM ::::::::::::::::::::::::::::::::::: gi|663 PNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM 130 140 150 >>gi|44890748|gb|AAH66917.1| Ubiquitin-conjugating enzym (147 aa) initn: 1033 init1: 1033 opt: 1033 Z-score: 1336.2 bits: 253.3 E(): 1.1e-65 Smith-Waterman score: 1033; 99.320% identity (100.000% similar) in 147 aa overlap (9-155:1-147) 10 20 30 40 50 60 bm0575 GARRQAHTMALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFL :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|448 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFL 10 20 30 40 50 70 80 90 100 110 120 bm0575 TIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|448 TIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCD 60 70 80 90 100 110 130 140 150 bm0575 PNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM ::::::::::.:::::::::::::::::::::::: gi|448 PNPDDPLVPELARIYKTDRDKYNRISREWTQKYAM 120 130 140 >>gi|126321038|ref|XP_001367781.1| PREDICTED: similar to (147 aa) initn: 1033 init1: 1033 opt: 1033 Z-score: 1336.2 bits: 253.3 E(): 1.1e-65 Smith-Waterman score: 1033; 99.320% identity (100.000% similar) in 147 aa overlap (9-155:1-147) 10 20 30 40 50 60 bm0575 GARRQAHTMALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFL :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFL 10 20 30 40 50 70 80 90 100 110 120 bm0575 TIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCD ::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::: gi|126 TIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTLSKVLLSICSLLCD 60 70 80 90 100 110 130 140 150 bm0575 PNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM ::::::::::::::::::::::::::::::::::: gi|126 PNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM 120 130 140 >>gi|74142433|dbj|BAE31970.1| unnamed protein product [M (147 aa) initn: 1031 init1: 1031 opt: 1031 Z-score: 1333.6 bits: 252.8 E(): 1.6e-65 Smith-Waterman score: 1031; 99.320% identity (100.000% similar) in 147 aa overlap (9-155:1-147) 10 20 30 40 50 60 bm0575 GARRQAHTMALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFL :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFL 10 20 30 40 50 70 80 90 100 110 120 bm0575 TIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 TIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCD 60 70 80 90 100 110 130 140 150 bm0575 PNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM :::::::::.::::::::::::::::::::::::: gi|741 PNPDDPLVPKIARIYKTDRDKYNRISREWTQKYAM 120 130 140 >>gi|48145949|emb|CAG33197.1| UBE2D3 [Homo sapiens] (147 aa) initn: 1030 init1: 1030 opt: 1030 Z-score: 1332.4 bits: 252.6 E(): 1.9e-65 Smith-Waterman score: 1030; 98.639% identity (100.000% similar) in 147 aa overlap (9-155:1-147) 10 20 30 40 50 60 bm0575 GARRQAHTMALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFL :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|481 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFL 10 20 30 40 50 70 80 90 100 110 120 bm0575 TIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|481 TIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCD 60 70 80 90 100 110 130 140 150 bm0575 PNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM ::::::::::::::::::::::::.:::::::::. gi|481 PNPDDPLVPEIARIYKTDRDKYNRVSREWTQKYAI 120 130 140 >>gi|93279754|pdb|2FUH|A Chain A, Solution Structure Of (146 aa) initn: 1029 init1: 1029 opt: 1029 Z-score: 1331.1 bits: 252.3 E(): 2.2e-65 Smith-Waterman score: 1029; 100.000% identity (100.000% similar) in 146 aa overlap (10-155:1-146) 10 20 30 40 50 60 bm0575 GARRQAHTMALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFL ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|932 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFL 10 20 30 40 50 70 80 90 100 110 120 bm0575 TIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|932 TIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCD 60 70 80 90 100 110 130 140 150 bm0575 PNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM ::::::::::::::::::::::::::::::::::: gi|932 PNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM 120 130 140 >>gi|12833659|dbj|BAB22614.1| unnamed protein product [M (147 aa) initn: 1027 init1: 1027 opt: 1027 Z-score: 1328.5 bits: 251.9 E(): 3e-65 Smith-Waterman score: 1027; 99.320% identity (99.320% similar) in 147 aa overlap (9-155:1-147) 10 20 30 40 50 60 bm0575 GARRQAHTMALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFL :::::::::::::::::::::::::::: ::::::::::::::::::::::: gi|128 MALKRINKELSDLARDPPAQCSAGPVGDGMFHWQATIMGPNDSPYQGGVFFL 10 20 30 40 50 70 80 90 100 110 120 bm0575 TIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 TIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCD 60 70 80 90 100 110 130 140 150 bm0575 PNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM ::::::::::::::::::::::::::::::::::: gi|128 PNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM 120 130 140 >>gi|110288000|sp|Q3ZCF7.1|UB2D3_BOVIN RecName: Full=Ubi (147 aa) initn: 1027 init1: 1027 opt: 1027 Z-score: 1328.5 bits: 251.9 E(): 3e-65 Smith-Waterman score: 1027; 99.320% identity (99.320% similar) in 147 aa overlap (9-155:1-147) 10 20 30 40 50 60 bm0575 GARRQAHTMALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFL :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|110 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFL 10 20 30 40 50 70 80 90 100 110 120 bm0575 TIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCD ::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::: gi|110 TIHFPTDYPFKPPKVAFTTRIYHPNINSNDSICLDILRSQWSPALTISKVLLSICSLLCD 60 70 80 90 100 110 130 140 150 bm0575 PNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM ::::::::::::::::::::::::::::::::::: gi|110 PNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM 120 130 140 >>gi|114600875|ref|XP_517826.2| PREDICTED: similar to ub (147 aa) initn: 1026 init1: 1026 opt: 1026 Z-score: 1327.2 bits: 251.6 E(): 3.6e-65 Smith-Waterman score: 1026; 98.639% identity (100.000% similar) in 147 aa overlap (9-155:1-147) 10 20 30 40 50 60 bm0575 GARRQAHTMALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFL :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFL 10 20 30 40 50 70 80 90 100 110 120 bm0575 TIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCD :::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::: gi|114 TIHFPTDYPFKPPKVVFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCD 60 70 80 90 100 110 130 140 150 bm0575 PNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM :::::::::::::::::::::::::::::::::.: gi|114 PNPDDPLVPEIARIYKTDRDKYNRISREWTQKYTM 120 130 140 155 residues in 1 query sequences 3020366983 residues in 8842601 library sequences Tcomplib [34.26] (8 proc) start: Mon May 25 12:23:13 2009 done: Mon May 25 12:27:04 2009 Total Scan time: 746.100 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]