hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090525/iprscan-20090525-12270529/chunk_1/iprscan-20090525-12270529.nocrc
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Query sequence: bm05752
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00179.16.ls Ubiquitin-conjugating enzyme                   274.2    2.4e-79   1
PF00179.16.fs Ubiquitin-conjugating enzyme                   272.3    8.7e-79   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00179.16.fs   1/1      13   150 ..     1   165 []   272.3  8.7e-79
PF00179.16.ls   1/1      13   150 ..     1   165 []   274.2  2.4e-79

Alignments of top-scoring domains:
PF00179.16.fs: domain 1 of 1, from 13 to 150: score 272.3, E = 8.7e-79
                   *->RLqkElkelektelqkdpppgisagpvddadgpnnlfeWevtIiGPe
                      R+ kEl+     +l +dpp+ +sagpv d     ++f+W++tI+GP 
     bm05752    13    RINKELS-----DLARDPPAQCSAGPVGD-----DMFHWQATIMGPN 49   

                   gTpYeGGvFkldieFPedYPfkPPkvkFtTkiyHPNVdspsGeiCLdILk
                   ++pY+GGvF+l+i+FP dYPfkPPkv FtT+iyHPN++ ++G+iCLdIL+
     bm05752    50 DSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-SNGSICLDILR 98   

                   PGDDpgYEaderddevWsPaltvrsvLlsiqsLLLsePyNpesPlnaeaA
                            ++     WsPalt+++vLlsi+sLL ++P Np++Pl  e+A
     bm05752    99 ---------SQ-----WSPALTISKVLLSICSLL-CDP-NPDDPLVPEIA 132  

                   klykenreefkkrvrerv<-*
                   ++yk++r  ++++ re++   
     bm05752   133 RIYKTDRDKYNRISREWT    150  

PF00179.16.ls: domain 1 of 1, from 13 to 150: score 274.2, E = 2.4e-79
                   *->RLqkElkelektelqkdpppgisagpvddadgpnnlfeWevtIiGPe
                      R+ kEl+     +l +dpp+ +sagpv d     ++f+W++tI+GP 
     bm05752    13    RINKELS-----DLARDPPAQCSAGPVGD-----DMFHWQATIMGPN 49   

                   gTpYeGGvFkldieFPedYPfkPPkvkFtTkiyHPNVdspsGeiCLdILk
                   ++pY+GGvF+l+i+FP dYPfkPPkv FtT+iyHPN++ ++G+iCLdIL+
     bm05752    50 DSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-SNGSICLDILR 98   

                   PGDDpgYEaderddevWsPaltvrsvLlsiqsLLLsePyNpesPlnaeaA
                            ++     WsPalt+++vLlsi+sLL ++P Np++Pl  e+A
     bm05752    99 ---------SQ-----WSPALTISKVLLSICSLL-CDP-NPDDPLVPEIA 132  

                   klykenreefkkrvrerv<-*
                   ++yk++r  ++++ re++   
     bm05752   133 RIYKTDRDKYNRISREWT    150  

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