hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-01364860/chunk_1/iprscan-20080808-01364860.nocrc
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Query sequence: bm05765
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00628.19.fs PHD-finger                                      85.4    5.6e-27   2
PF00628.19.ls PHD-finger                                      85.8    1.2e-22   2
PF00096.16.ls Zinc finger, C2H2 type                          22.2     0.0017   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00096.16.ls   1/1     210   233 ..     1    24 []    22.2   0.0017
PF00628.19.fs   1/2     273   331 ..     1    51 []    37.3  1.5e-11
PF00628.19.ls   1/2     273   331 ..     1    51 []    39.2  1.3e-08
PF00628.19.ls   2/2     333   378 ..     1    51 []    46.5  8.1e-11
PF00628.19.fs   2/2     333   378 ..     4    51 .]    48.1    5e-15

Alignments of top-scoring domains:
PF00096.16.ls: domain 1 of 1, from 210 to 233: score 22.2, E = 0.0017
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      y C+ +Cgk+++++  L  H   +H   
     bm05765   210    YACD-ICGKRYKNRPGLSYHYAHsH    233  

PF00628.19.fs: domain 1 of 2, from 273 to 331: score 37.3, E = 1.5e-11
                   *->yCsvCgkey.....sdaggdllqCDgCdrwfHlaClgpplepeeipe
                      yC++C +  + +++++ +++l+ C +C+r+ H++Cl +++ ++   +
     bm05765   273    YCDFCLGDSkinkkTGQPEELVSCSDCGRSGHPSCLQFTPVMMAAVK 319  

                   ...WyCpeCkpk<-*
                   + +W+C eCk++   
     bm05765   320 tyrWQCIECKCC    331  

PF00628.19.ls: domain 1 of 2, from 273 to 331: score 39.2, E = 1.3e-08
                   *->yCsvCgkey.....sdaggdllqCDgCdrwfHlaClgpplepeeipe
                      yC++C +  + +++++ +++l+ C +C+r+ H++Cl +++ ++   +
     bm05765   273    YCDFCLGDSkinkkTGQPEELVSCSDCGRSGHPSCLQFTPVMMAAVK 319  

                   ...WyCpeCkpk<-*
                   + +W+C eCk++   
     bm05765   320 tyrWQCIECKCC    331  

PF00628.19.ls: domain 2 of 2, from 333 to 378: score 46.5, E = 8.1e-11
                   *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe..WyC
                         +Cg   s++++ ll+CD+Cdr +H++Cl p+++  e+pe++W C
     bm05765   333    ---ICGT--SENDDQLLFCDDCDRGYHMYCLTPSMS--EPPEgsWSC 372  

                   peCkpk<-*
                     C      
     bm05765   373 HLCLDL    378  

PF00628.19.fs: domain 2 of 2, from 333 to 378: score 48.1, E = 5e-15
                   *->vCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe..WyCpeC
                      +Cg   s++++ ll+CD+Cdr +H++Cl p+++  e+pe++W C  C
     bm05765   333    ICGT--SENDDQLLFCDDCDRGYHMYCLTPSMS--EPPEgsWSCHLC 375  

                   kpk<-*
                         
     bm05765   376 LDL    378  

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