hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-01364860/chunk_1/iprscan-20080808-01364860.nocrc
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Query sequence: bm05765
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00249                                                  97.3    1.8e-24   2
SM00355                                                  26.0     0.0051   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/1     210   233 ..     1    23 []    26.0   0.0051
SM00249      1/2     273   329 ..     1    39 []    44.4  1.5e-08
SM00249      2/2     330   376 ..     1    39 []    52.9  4.2e-11

Alignments of top-scoring domains:
SM00355: domain 1 of 1, from 210 to 233: score 26.0, E = 0.0051
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      y C+i Cgk++++++ L  H+ ++H   
     bm05765   210    YACDI-CGKRYKNRpGLSYHYAhSH    233  

SM00249: domain 1 of 2, from 273 to 329: score 44.4, E = 1.5e-08
                   *->yC.vCgk...........g.llqCdkgCdrwyHv.Clgpple....e
                      yC++C ++++ +++++ +++l++C+  C+r+ H++Cl++++     +
     bm05765   273    YCdFCLGdskinkktgqpEeLVSCS-DCGRSGHPsCLQFTPVmmaaV 318  

                   pdg.wyCprCk<-*
                   ++ +w+C +Ck   
     bm05765   319 KTYrWQCIECK    329  

SM00249: domain 2 of 2, from 330 to 376: score 52.9, E = 4.2e-11
                   *->yC.vCgk....g.llqCdkgCdrwyHv.Clgpple.epdg.wyCprC
                       C++Cg ++++++ll+Cd  Cdr yH+ Cl p+++++p+g+w C  C
     bm05765   330    CCnICGTsendDqLLFCD-DCDRGYHMyCLTPSMSePPEGsWSCHLC 375  

                   k<-*
                   +   
     bm05765   376 L    376  

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