# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Obm05861.fasta.nr -Q bm05861.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 bm05861, 515 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6823908 sequences Expectation_n fit: rho(ln(x))= 4.9457+/-0.000183; mu= 13.3442+/- 0.010 mean_var=71.8522+/-13.820, 0's: 40 Z-trim: 48 B-trim: 0 in 0/67 Lambda= 0.151305 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|62089264|dbj|BAD93076.1| amyloid beta precursor ( 515) 3599 794.8 0 gi|114602146|ref|XP_001139279.1| PREDICTED: amyloi ( 614) 3538 781.6 0 gi|114602148|ref|XP_001139203.1| PREDICTED: amyloi ( 621) 3514 776.3 0 gi|114602150|ref|XP_517974.2| PREDICTED: amyloid b ( 612) 3509 775.2 0 gi|114602152|ref|XP_001139115.1| PREDICTED: amyloi ( 619) 3509 775.2 0 gi|109078960|ref|XP_001086817.1| PREDICTED: amyloi ( 637) 3450 762.4 0 gi|115528746|gb|AAI25188.1| Amyloid beta (A4) prec ( 486) 3389 749.0 6e-214 gi|12643663|sp|O95704|APBB3_HUMAN Amyloid beta A4 ( 486) 3372 745.2 7.8e-213 gi|15341938|gb|AAH13158.1| Amyloid beta (A4) precu ( 486) 3365 743.7 2.3e-212 gi|95147538|ref|NP_006042.3| amyloid beta precurso ( 493) 3365 743.7 2.3e-212 gi|95147542|ref|NP_573420.2| amyloid beta precurso ( 484) 3360 742.6 4.8e-212 gi|95147536|ref|NP_573418.2| amyloid beta precurso ( 491) 3360 742.6 4.8e-212 gi|7630294|gb|AAF65175.1|AF224711_1 amyloid precur ( 493) 3348 740.0 3e-211 gi|7630292|gb|AAF65174.1|AF224710_1 amyloid precur ( 484) 3343 738.9 6.3e-211 gi|7630288|gb|AAF65172.1|AF224708_1 amyloid precur ( 491) 3343 738.9 6.3e-211 gi|111305463|gb|AAI20444.1| Amyloid beta (A4) prec ( 486) 3200 707.7 1.6e-201 gi|149726274|ref|XP_001504216.1| PREDICTED: simila ( 486) 3179 703.1 3.8e-200 gi|73949308|ref|XP_857384.1| PREDICTED: similar to ( 491) 3169 700.9 1.7e-199 gi|149726272|ref|XP_001504219.1| PREDICTED: simila ( 493) 3155 697.9 1.4e-198 gi|149726278|ref|XP_001504217.1| PREDICTED: simila ( 484) 3150 696.8 3e-198 gi|149726276|ref|XP_001504222.1| PREDICTED: simila ( 491) 3150 696.8 3e-198 gi|73949292|ref|XP_857048.1| PREDICTED: similar to ( 489) 3140 694.6 1.4e-197 gi|52782743|sp|Q8R1C9|APBB3_MOUSE Amyloid beta A4 ( 486) 3106 687.2 2.4e-195 gi|148664752|gb|EDK97168.1| amyloid beta (A4) prec ( 484) 3067 678.7 8.6e-193 gi|12229623|sp|O35827|APBB3_RAT Amyloid beta A4 pr ( 504) 3055 676.1 5.4e-192 gi|126290423|ref|XP_001368618.1| PREDICTED: hypoth ( 488) 2922 647.0 2.9e-183 gi|126290426|ref|XP_001368649.1| PREDICTED: hypoth ( 486) 2893 640.7 2.3e-181 gi|126290429|ref|XP_001368683.1| PREDICTED: hypoth ( 496) 2887 639.4 5.9e-181 gi|114602154|ref|XP_001138698.1| PREDICTED: amyloi ( 568) 2534 562.4 1e-157 gi|119582448|gb|EAW62044.1| amyloid beta (A4) prec ( 445) 2509 556.8 3.7e-156 gi|73949304|ref|XP_857301.1| PREDICTED: similar to ( 496) 2139 476.1 8.3e-132 gi|28316330|dbj|BAC56948.1| Fe65L2 isoform 339 [Ho ( 339) 2136 475.3 9.9e-132 gi|73949300|ref|XP_857225.1| PREDICTED: similar to ( 335) 1975 440.2 3.7e-121 gi|119582452|gb|EAW62048.1| amyloid beta (A4) prec ( 495) 1876 418.7 1.6e-114 gi|119582453|gb|EAW62049.1| amyloid beta (A4) prec ( 276) 1869 416.9 3e-114 gi|119582446|gb|EAW62042.1| amyloid beta (A4) prec ( 263) 1785 398.6 9.5e-109 gi|149017253|gb|EDL76304.1| amyloid beta (A4) prec ( 286) 1770 395.4 9.8e-108 gi|73949306|ref|XP_848881.1| PREDICTED: similar to ( 498) 1766 394.7 2.7e-107 gi|118097194|ref|XP_425180.2| PREDICTED: similar t ( 583) 1619 362.6 1.4e-97 gi|16610211|dbj|BAB71767.1| Fe65L2 isoform 245 [Ho ( 245) 1495 335.3 1e-89 gi|134025634|gb|AAI36041.1| LOC100125004 protein [ ( 493) 1497 336.0 1.3e-89 gi|109074092|ref|XP_001097230.1| PREDICTED: amyloi ( 718) 1432 321.9 3.2e-85 gi|73949302|ref|XP_857263.1| PREDICTED: similar to ( 241) 1402 315.0 1.3e-83 gi|13548671|dbj|BAB40806.1| Fe65L2 isoform 214 (I- ( 214) 1390 312.3 7.3e-83 gi|66911626|gb|AAH97935.1| Apbb3 protein [Rattus n ( 207) 1336 300.5 2.5e-79 gi|73949298|ref|XP_857175.1| PREDICTED: similar to ( 216) 1300 292.7 6.1e-77 gi|149580693|ref|XP_001518203.1| PREDICTED: simila ( 278) 1161 262.4 1e-67 gi|171846392|gb|AAI61628.1| Unknown (protein for M ( 757) 1117 253.2 1.6e-64 gi|73951513|ref|XP_863047.1| PREDICTED: similar to ( 760) 1108 251.2 6.4e-64 gi|189514588|ref|XP_693392.3| PREDICTED: amyloid b ( 894) 1102 249.9 1.8e-63 >>gi|62089264|dbj|BAD93076.1| amyloid beta precursor pro (515 aa) initn: 3599 init1: 3599 opt: 3599 Z-score: 4243.6 bits: 794.8 E(): 0 Smith-Waterman score: 3599; 100.000% identity (100.000% similar) in 515 aa overlap (1-515:1-515) 10 20 30 40 50 60 bm0586 GWACRRSSSRGRAGLRVRAGRGWRGAAGVMLGKDYMLAIILVNCDDDLWGDHSLEVEAGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 GWACRRSSSRGRAGLRVRAGRGWRGAAGVMLGKDYMLAIILVNCDDDLWGDHSLEVEAGL 10 20 30 40 50 60 70 80 90 100 110 120 bm0586 PPGWRKIHDAAGTYYWHVPSGSTQWQRPTWELGDAEDPGTGTEGIWGLRPPKGRSFSSLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 PPGWRKIHDAAGTYYWHVPSGSTQWQRPTWELGDAEDPGTGTEGIWGLRPPKGRSFSSLE 70 80 90 100 110 120 130 140 150 160 170 180 bm0586 SSLDRSNSLSWYGGESYIQSMEPGAKCFAVRSLGWVEVPEEDLAPGKSSIAVNNCIQQLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 SSLDRSNSLSWYGGESYIQSMEPGAKCFAVRSLGWVEVPEEDLAPGKSSIAVNNCIQQLA 130 140 150 160 170 180 190 200 210 220 230 240 bm0586 QTRSRSQPPDGAWGEGQNMLMILKKDAMSLVNPLDHSLIHCQPLVHIRVWGVGSSKGRDR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 QTRSRSQPPDGAWGEGQNMLMILKKDAMSLVNPLDHSLIHCQPLVHIRVWGVGSSKGRDR 190 200 210 220 230 240 250 260 270 280 290 300 bm0586 DFAFVASDKDSCMLKCHVFCCDVPAKAIASALHGLCAQILSERVEVSGDASCCSPDPISP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 DFAFVASDKDSCMLKCHVFCCDVPAKAIASALHGLCAQILSERVEVSGDASCCSPDPISP 250 260 270 280 290 300 310 320 330 340 350 360 bm0586 EDLPRQVELLDAVSQAAQKYEALYMGTLPVTKAMGMDVLNEAIGTLTARGDRNAWVPTML :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 EDLPRQVELLDAVSQAAQKYEALYMGTLPVTKAMGMDVLNEAIGTLTARGDRNAWVPTML 310 320 330 340 350 360 370 380 390 400 410 420 bm0586 SVSDSLMTAHPIQAEASTEEEPLWQCPVRLVTFIGVGRDPHTFGLIADLGRQSFQCAAFW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 SVSDSLMTAHPIQAEASTEEEPLWQCPVRLVTFIGVGRDPHTFGLIADLGRQSFQCAAFW 370 380 390 400 410 420 430 440 450 460 470 480 bm0586 CQPHAGGLSEAVQAACMVQYQKCLVASAARGKAWGAQARARLRLKRTSSMDSPGGPLPLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 CQPHAGGLSEAVQAACMVQYQKCLVASAARGKAWGAQARARLRLKRTSSMDSPGGPLPLP 430 440 450 460 470 480 490 500 510 bm0586 LLKGGVGGAGATPRKRGVFSFLDAFRLKPSLLHMP ::::::::::::::::::::::::::::::::::: gi|620 LLKGGVGGAGATPRKRGVFSFLDAFRLKPSLLHMP 490 500 510 >>gi|114602146|ref|XP_001139279.1| PREDICTED: amyloid be (614 aa) initn: 3538 init1: 3538 opt: 3538 Z-score: 4170.7 bits: 781.6 E(): 0 Smith-Waterman score: 3538; 98.835% identity (99.029% similar) in 515 aa overlap (1-515:100-614) 10 20 30 bm0586 GWACRRSSSRGRAGLRVRAGRGWRGAAGVM :::::::::::::::::::::::::::::: gi|114 ALPRDRPVSRPVSHPVFVRRQLAPQPAAQRGWACRRSSSRGRAGLRVRAGRGWRGAAGVM 70 80 90 100 110 120 40 50 60 70 80 90 bm0586 LGKDYMLAIILVNCDDDLWGDHSLEVEAGLPPGWRKIHDAAGTYYWHVPSGSTQWQRPTW ::::::::::::::::::: ::::: :::::::::::::::::::::::::::::::::: gi|114 LGKDYMLAIILVNCDDDLWEDHSLEGEAGLPPGWRKIHDAAGTYYWHVPSGSTQWQRPTW 130 140 150 160 170 180 100 110 120 130 140 150 bm0586 ELGDAEDPGTGTEGIWGLRPPKGRSFSSLESSLDRSNSLSWYGGESYIQSMEPGAKCFAV ::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::: gi|114 ELGDAEDPGTGTEGIWGLRPPKGRSFSSLESSLDRSNSLSWYGEESYIQSMEPGAKCFAV 190 200 210 220 230 240 160 170 180 190 200 210 bm0586 RSLGWVEVPEEDLAPGKSSIAVNNCIQQLAQTRSRSQPPDGAWGEGQNMLMILKKDAMSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 RSLGWVEVPEEDLAPGKSSIAVNNCIQQLAQTRSRSQPPDGAWGEGQNMLMILKKDAMSL 250 260 270 280 290 300 220 230 240 250 260 270 bm0586 VNPLDHSLIHCQPLVHIRVWGVGSSKGRDRDFAFVASDKDSCMLKCHVFCCDVPAKAIAS :::.::::::::::::::::::::::::::::::::::::::::::::: :::::::::: gi|114 VNPVDHSLIHCQPLVHIRVWGVGSSKGRDRDFAFVASDKDSCMLKCHVFRCDVPAKAIAS 310 320 330 340 350 360 280 290 300 310 320 330 bm0586 ALHGLCAQILSERVEVSGDASCCSPDPISPEDLPRQVELLDAVSQAAQKYEALYMGTLPV :::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::: gi|114 ALHGLCAQILSERVGVSGDASCCSPDPISPEDLPRQVELLDAVSQAAQKYEALYMGTLPV 370 380 390 400 410 420 340 350 360 370 380 390 bm0586 TKAMGMDVLNEAIGTLTARGDRNAWVPTMLSVSDSLMTAHPIQAEASTEEEPLWQCPVRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 TKAMGMDVLNEAIGTLTARGDRNAWVPTMLSVSDSLMTAHPIQAEASTEEEPLWQCPVRL 430 440 450 460 470 480 400 410 420 430 440 450 bm0586 VTFIGVGRDPHTFGLIADLGRQSFQCAAFWCQPHAGGLSEAVQAACMVQYQKCLVASAAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 VTFIGVGRDPHTFGLIADLGRQSFQCAAFWCQPHAGGLSEAVQAACMVQYQKCLVASAAR 490 500 510 520 530 540 460 470 480 490 500 510 bm0586 GKAWGAQARARLRLKRTSSMDSPGGPLPLPLLKGGVGGAGATPRKRGVFSFLDAFRLKPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 GKAWGAQARARLRLKRTSSMDSPGGPLPLPLLKGGVGGAGATPRKRGVFSFLDAFRLKPS 550 560 570 580 590 600 bm0586 LLHMP ::::: gi|114 LLHMP 610 >>gi|114602148|ref|XP_001139203.1| PREDICTED: amyloid be (621 aa) initn: 3524 init1: 1867 opt: 3514 Z-score: 4142.3 bits: 776.3 E(): 0 Smith-Waterman score: 3514; 97.510% identity (97.701% similar) in 522 aa overlap (1-515:100-621) 10 20 30 bm0586 GWACRRSSSRGRAGLRVRAGRGWRGAAGVM :::::::::::::::::::::::::::::: gi|114 ALPRDRPVSRPVSHPVFVRRQLAPQPAAQRGWACRRSSSRGRAGLRVRAGRGWRGAAGVM 70 80 90 100 110 120 40 50 60 70 80 90 bm0586 LGKDYMLAIILVNCDDDLWGDHSLEVEAGLPPGWRKIHDAAGTYYWHVPSGSTQWQRPTW ::::::::::::::::::: ::::: :::::::::::::::::::::::::::::::::: gi|114 LGKDYMLAIILVNCDDDLWEDHSLEGEAGLPPGWRKIHDAAGTYYWHVPSGSTQWQRPTW 130 140 150 160 170 180 100 110 120 130 140 150 bm0586 ELGDAEDPGTGTEGIWGLRPPKGRSFSSLESSLDRSNSLSWYGGESYIQSMEPGAKCFAV ::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::: gi|114 ELGDAEDPGTGTEGIWGLRPPKGRSFSSLESSLDRSNSLSWYGEESYIQSMEPGAKCFAV 190 200 210 220 230 240 160 170 180 190 200 210 bm0586 RSLGWVEVPEEDLAPGKSSIAVNNCIQQLAQTRSRSQPPDGAWGEGQNMLMILKKDAMSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 RSLGWVEVPEEDLAPGKSSIAVNNCIQQLAQTRSRSQPPDGAWGEGQNMLMILKKDAMSL 250 260 270 280 290 300 220 230 240 250 260 bm0586 VNPLDHSLIHCQPLVHIRVWGVGSSKGRD-------RDFAFVASDKDSCMLKCHVFCCDV :::.::::::::::::::::::::::::: :::::::::::::::::::: ::: gi|114 VNPVDHSLIHCQPLVHIRVWGVGSSKGRDSPISAPARDFAFVASDKDSCMLKCHVFRCDV 310 320 330 340 350 360 270 280 290 300 310 320 bm0586 PAKAIASALHGLCAQILSERVEVSGDASCCSPDPISPEDLPRQVELLDAVSQAAQKYEAL ::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::: gi|114 PAKAIASALHGLCAQILSERVGVSGDASCCSPDPISPEDLPRQVELLDAVSQAAQKYEAL 370 380 390 400 410 420 330 340 350 360 370 380 bm0586 YMGTLPVTKAMGMDVLNEAIGTLTARGDRNAWVPTMLSVSDSLMTAHPIQAEASTEEEPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 YMGTLPVTKAMGMDVLNEAIGTLTARGDRNAWVPTMLSVSDSLMTAHPIQAEASTEEEPL 430 440 450 460 470 480 390 400 410 420 430 440 bm0586 WQCPVRLVTFIGVGRDPHTFGLIADLGRQSFQCAAFWCQPHAGGLSEAVQAACMVQYQKC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 WQCPVRLVTFIGVGRDPHTFGLIADLGRQSFQCAAFWCQPHAGGLSEAVQAACMVQYQKC 490 500 510 520 530 540 450 460 470 480 490 500 bm0586 LVASAARGKAWGAQARARLRLKRTSSMDSPGGPLPLPLLKGGVGGAGATPRKRGVFSFLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LVASAARGKAWGAQARARLRLKRTSSMDSPGGPLPLPLLKGGVGGAGATPRKRGVFSFLD 550 560 570 580 590 600 510 bm0586 AFRLKPSLLHMP :::::::::::: gi|114 AFRLKPSLLHMP 610 620 >>gi|114602150|ref|XP_517974.2| PREDICTED: amyloid beta (612 aa) initn: 1875 init1: 1875 opt: 3509 Z-score: 4136.5 bits: 775.2 E(): 0 Smith-Waterman score: 3509; 98.447% identity (98.641% similar) in 515 aa overlap (1-515:100-612) 10 20 30 bm0586 GWACRRSSSRGRAGLRVRAGRGWRGAAGVM :::::::::::::::::::::::::::::: gi|114 ALPRDRPVSRPVSHPVFVRRQLAPQPAAQRGWACRRSSSRGRAGLRVRAGRGWRGAAGVM 70 80 90 100 110 120 40 50 60 70 80 90 bm0586 LGKDYMLAIILVNCDDDLWGDHSLEVEAGLPPGWRKIHDAAGTYYWHVPSGSTQWQRPTW ::::::::::::::::::: ::::: :::::::::::::::::::::::::::::::::: gi|114 LGKDYMLAIILVNCDDDLWEDHSLEGEAGLPPGWRKIHDAAGTYYWHVPSGSTQWQRPTW 130 140 150 160 170 180 100 110 120 130 140 150 bm0586 ELGDAEDPGTGTEGIWGLRPPKGRSFSSLESSLDRSNSLSWYGGESYIQSMEPGAKCFAV ::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::: gi|114 ELGDAEDPGTGTEGIWGLRPPKGRSFSSLESSLDRSNSLSWYGEESYIQSMEPGAKCFAV 190 200 210 220 230 240 160 170 180 190 200 210 bm0586 RSLGWVEVPEEDLAPGKSSIAVNNCIQQLAQTRSRSQPPDGAWGEGQNMLMILKKDAMSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 RSLGWVEVPEEDLAPGKSSIAVNNCIQQLAQTRSRSQPPDGAWGEGQNMLMILKKDAMSL 250 260 270 280 290 300 220 230 240 250 260 270 bm0586 VNPLDHSLIHCQPLVHIRVWGVGSSKGRDRDFAFVASDKDSCMLKCHVFCCDVPAKAIAS :::.:::::::::::::::::::::::: ::::::::::::::::::: :::::::::: gi|114 VNPVDHSLIHCQPLVHIRVWGVGSSKGR--DFAFVASDKDSCMLKCHVFRCDVPAKAIAS 310 320 330 340 350 360 280 290 300 310 320 330 bm0586 ALHGLCAQILSERVEVSGDASCCSPDPISPEDLPRQVELLDAVSQAAQKYEALYMGTLPV :::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::: gi|114 ALHGLCAQILSERVGVSGDASCCSPDPISPEDLPRQVELLDAVSQAAQKYEALYMGTLPV 370 380 390 400 410 420 340 350 360 370 380 390 bm0586 TKAMGMDVLNEAIGTLTARGDRNAWVPTMLSVSDSLMTAHPIQAEASTEEEPLWQCPVRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 TKAMGMDVLNEAIGTLTARGDRNAWVPTMLSVSDSLMTAHPIQAEASTEEEPLWQCPVRL 430 440 450 460 470 480 400 410 420 430 440 450 bm0586 VTFIGVGRDPHTFGLIADLGRQSFQCAAFWCQPHAGGLSEAVQAACMVQYQKCLVASAAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 VTFIGVGRDPHTFGLIADLGRQSFQCAAFWCQPHAGGLSEAVQAACMVQYQKCLVASAAR 490 500 510 520 530 540 460 470 480 490 500 510 bm0586 GKAWGAQARARLRLKRTSSMDSPGGPLPLPLLKGGVGGAGATPRKRGVFSFLDAFRLKPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 GKAWGAQARARLRLKRTSSMDSPGGPLPLPLLKGGVGGAGATPRKRGVFSFLDAFRLKPS 550 560 570 580 590 600 bm0586 LLHMP ::::: gi|114 LLHMP 610 >>gi|114602152|ref|XP_001139115.1| PREDICTED: amyloid be (619 aa) initn: 3516 init1: 1867 opt: 3509 Z-score: 4136.4 bits: 775.2 E(): 0 Smith-Waterman score: 3509; 97.692% identity (97.885% similar) in 520 aa overlap (1-515:100-619) 10 20 30 bm0586 GWACRRSSSRGRAGLRVRAGRGWRGAAGVM :::::::::::::::::::::::::::::: gi|114 ALPRDRPVSRPVSHPVFVRRQLAPQPAAQRGWACRRSSSRGRAGLRVRAGRGWRGAAGVM 70 80 90 100 110 120 40 50 60 70 80 90 bm0586 LGKDYMLAIILVNCDDDLWGDHSLEVEAGLPPGWRKIHDAAGTYYWHVPSGSTQWQRPTW ::::::::::::::::::: ::::: :::::::::::::::::::::::::::::::::: gi|114 LGKDYMLAIILVNCDDDLWEDHSLEGEAGLPPGWRKIHDAAGTYYWHVPSGSTQWQRPTW 130 140 150 160 170 180 100 110 120 130 140 150 bm0586 ELGDAEDPGTGTEGIWGLRPPKGRSFSSLESSLDRSNSLSWYGGESYIQSMEPGAKCFAV ::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::: gi|114 ELGDAEDPGTGTEGIWGLRPPKGRSFSSLESSLDRSNSLSWYGEESYIQSMEPGAKCFAV 190 200 210 220 230 240 160 170 180 190 200 210 bm0586 RSLGWVEVPEEDLAPGKSSIAVNNCIQQLAQTRSRSQPPDGAWGEGQNMLMILKKDAMSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 RSLGWVEVPEEDLAPGKSSIAVNNCIQQLAQTRSRSQPPDGAWGEGQNMLMILKKDAMSL 250 260 270 280 290 300 220 230 240 250 260 bm0586 VNPLDHSLIHCQPLVHIRVWGVGSSKGRD-----RDFAFVASDKDSCMLKCHVFCCDVPA :::.:::::::::::::::::::::::: :::::::::::::::::::: ::::: gi|114 VNPVDHSLIHCQPLVHIRVWGVGSSKGRPISAPARDFAFVASDKDSCMLKCHVFRCDVPA 310 320 330 340 350 360 270 280 290 300 310 320 bm0586 KAIASALHGLCAQILSERVEVSGDASCCSPDPISPEDLPRQVELLDAVSQAAQKYEALYM ::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::: gi|114 KAIASALHGLCAQILSERVGVSGDASCCSPDPISPEDLPRQVELLDAVSQAAQKYEALYM 370 380 390 400 410 420 330 340 350 360 370 380 bm0586 GTLPVTKAMGMDVLNEAIGTLTARGDRNAWVPTMLSVSDSLMTAHPIQAEASTEEEPLWQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 GTLPVTKAMGMDVLNEAIGTLTARGDRNAWVPTMLSVSDSLMTAHPIQAEASTEEEPLWQ 430 440 450 460 470 480 390 400 410 420 430 440 bm0586 CPVRLVTFIGVGRDPHTFGLIADLGRQSFQCAAFWCQPHAGGLSEAVQAACMVQYQKCLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 CPVRLVTFIGVGRDPHTFGLIADLGRQSFQCAAFWCQPHAGGLSEAVQAACMVQYQKCLV 490 500 510 520 530 540 450 460 470 480 490 500 bm0586 ASAARGKAWGAQARARLRLKRTSSMDSPGGPLPLPLLKGGVGGAGATPRKRGVFSFLDAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 ASAARGKAWGAQARARLRLKRTSSMDSPGGPLPLPLLKGGVGGAGATPRKRGVFSFLDAF 550 560 570 580 590 600 510 bm0586 RLKPSLLHMP :::::::::: gi|114 RLKPSLLHMP 610 >>gi|109078960|ref|XP_001086817.1| PREDICTED: amyloid be (637 aa) initn: 3450 init1: 3450 opt: 3450 Z-score: 4066.6 bits: 762.4 E(): 0 Smith-Waterman score: 3450; 96.893% identity (98.058% similar) in 515 aa overlap (1-515:123-637) 10 20 30 bm0586 GWACRRSSSRGRAGLRVRAGRGWRGAAGVM ::::::::: :::::::::::.:::::::: gi|109 ALLRDRPVSRPVSRPVFVRRQLARQPAAQRGWACRRSSSGGRAGLRVRAGRSWRGAAGVM 100 110 120 130 140 150 40 50 60 70 80 90 bm0586 LGKDYMLAIILVNCDDDLWGDHSLEVEAGLPPGWRKIHDAAGTYYWHVPSGSTQWQRPTW :::::::::::::::::::::.::: : ::::::::::::::::::::::::::::::.: gi|109 LGKDYMLAIILVNCDDDLWGDQSLEGEPGLPPGWRKIHDAAGTYYWHVPSGSTQWQRPAW 160 170 180 190 200 210 100 110 120 130 140 150 bm0586 ELGDAEDPGTGTEGIWGLRPPKGRSFSSLESSLDRSNSLSWYGGESYIQSMEPGAKCFAV :::::::::::::::::::: :::::::::::::::::::: : :::::.:::::::::: gi|109 ELGDAEDPGTGTEGIWGLRPLKGRSFSSLESSLDRSNSLSWCGEESYIQNMEPGAKCFAV 220 230 240 250 260 270 160 170 180 190 200 210 bm0586 RSLGWVEVPEEDLAPGKSSIAVNNCIQQLAQTRSRSQPPDGAWGEGQNMLMILKKDAMSL :::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::: gi|109 RSLGWVEVPEEDLAPGKSSIAVNNCIQQLAQTRSRSQPLDGAWGEGQNMLMILKKDAMSL 280 290 300 310 320 330 220 230 240 250 260 270 bm0586 VNPLDHSLIHCQPLVHIRVWGVGSSKGRDRDFAFVASDKDSCMLKCHVFCCDVPAKAIAS ::::::::::::::::::::::::::::::::::::::::::::::::: ::::::.::: gi|109 VNPLDHSLIHCQPLVHIRVWGVGSSKGRDRDFAFVASDKDSCMLKCHVFRCDVPAKVIAS 340 350 360 370 380 390 280 290 300 310 320 330 bm0586 ALHGLCAQILSERVEVSGDASCCSPDPISPEDLPRQVELLDAVSQAAQKYEALYMGTLPV :::::::::::::: :: :::::::::::::::::::::::::::::::::::::::::: gi|109 ALHGLCAQILSERVGVSVDASCCSPDPISPEDLPRQVELLDAVSQAAQKYEALYMGTLPV 400 410 420 430 440 450 340 350 360 370 380 390 bm0586 TKAMGMDVLNEAIGTLTARGDRNAWVPTMLSVSDSLMTAHPIQAEASTEEEPLWQCPVRL :::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::: gi|109 TKAMGMDVLNEAIGTLTTRGDRNAWVPTMLSVSDSLMTAHPIQAEASTEEEPLWQCPVRL 460 470 480 490 500 510 400 410 420 430 440 450 bm0586 VTFIGVGRDPHTFGLIADLGRQSFQCAAFWCQPHAGGLSEAVQAACMVQYQKCLVASAAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 VTFIGVGRDPHTFGLIADLGRQSFQCAAFWCQPHAGGLSEAVQAACMVQYQKCLVASAAR 520 530 540 550 560 570 460 470 480 490 500 510 bm0586 GKAWGAQARARLRLKRTSSMDSPGGPLPLPLLKGGVGGAGATPRKRGVFSFLDAFRLKPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 GKAWGAQARARLRLKRTSSMDSPGGPLPLPLLKGGVGGAGATPRKRGVFSFLDAFRLKPS 580 590 600 610 620 630 bm0586 LLHMP ::::: gi|109 LLHMP >>gi|115528746|gb|AAI25188.1| Amyloid beta (A4) precurso (486 aa) initn: 3389 init1: 3389 opt: 3389 Z-score: 3996.2 bits: 749.0 E(): 6e-214 Smith-Waterman score: 3389; 100.000% identity (100.000% similar) in 486 aa overlap (30-515:1-486) 10 20 30 40 50 60 bm0586 GWACRRSSSRGRAGLRVRAGRGWRGAAGVMLGKDYMLAIILVNCDDDLWGDHSLEVEAGL ::::::::::::::::::::::::::::::: gi|115 MLGKDYMLAIILVNCDDDLWGDHSLEVEAGL 10 20 30 70 80 90 100 110 120 bm0586 PPGWRKIHDAAGTYYWHVPSGSTQWQRPTWELGDAEDPGTGTEGIWGLRPPKGRSFSSLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|115 PPGWRKIHDAAGTYYWHVPSGSTQWQRPTWELGDAEDPGTGTEGIWGLRPPKGRSFSSLE 40 50 60 70 80 90 130 140 150 160 170 180 bm0586 SSLDRSNSLSWYGGESYIQSMEPGAKCFAVRSLGWVEVPEEDLAPGKSSIAVNNCIQQLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|115 SSLDRSNSLSWYGGESYIQSMEPGAKCFAVRSLGWVEVPEEDLAPGKSSIAVNNCIQQLA 100 110 120 130 140 150 190 200 210 220 230 240 bm0586 QTRSRSQPPDGAWGEGQNMLMILKKDAMSLVNPLDHSLIHCQPLVHIRVWGVGSSKGRDR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|115 QTRSRSQPPDGAWGEGQNMLMILKKDAMSLVNPLDHSLIHCQPLVHIRVWGVGSSKGRDR 160 170 180 190 200 210 250 260 270 280 290 300 bm0586 DFAFVASDKDSCMLKCHVFCCDVPAKAIASALHGLCAQILSERVEVSGDASCCSPDPISP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|115 DFAFVASDKDSCMLKCHVFCCDVPAKAIASALHGLCAQILSERVEVSGDASCCSPDPISP 220 230 240 250 260 270 310 320 330 340 350 360 bm0586 EDLPRQVELLDAVSQAAQKYEALYMGTLPVTKAMGMDVLNEAIGTLTARGDRNAWVPTML :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|115 EDLPRQVELLDAVSQAAQKYEALYMGTLPVTKAMGMDVLNEAIGTLTARGDRNAWVPTML 280 290 300 310 320 330 370 380 390 400 410 420 bm0586 SVSDSLMTAHPIQAEASTEEEPLWQCPVRLVTFIGVGRDPHTFGLIADLGRQSFQCAAFW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|115 SVSDSLMTAHPIQAEASTEEEPLWQCPVRLVTFIGVGRDPHTFGLIADLGRQSFQCAAFW 340 350 360 370 380 390 430 440 450 460 470 480 bm0586 CQPHAGGLSEAVQAACMVQYQKCLVASAARGKAWGAQARARLRLKRTSSMDSPGGPLPLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|115 CQPHAGGLSEAVQAACMVQYQKCLVASAARGKAWGAQARARLRLKRTSSMDSPGGPLPLP 400 410 420 430 440 450 490 500 510 bm0586 LLKGGVGGAGATPRKRGVFSFLDAFRLKPSLLHMP ::::::::::::::::::::::::::::::::::: gi|115 LLKGGVGGAGATPRKRGVFSFLDAFRLKPSLLHMP 460 470 480 >>gi|12643663|sp|O95704|APBB3_HUMAN Amyloid beta A4 prec (486 aa) initn: 3372 init1: 3372 opt: 3372 Z-score: 3976.2 bits: 745.2 E(): 7.8e-213 Smith-Waterman score: 3372; 99.794% identity (99.794% similar) in 486 aa overlap (30-515:1-486) 10 20 30 40 50 60 bm0586 GWACRRSSSRGRAGLRVRAGRGWRGAAGVMLGKDYMLAIILVNCDDDLWGDHSLEVEAGL ::::::::::::::::::::::::::::::: gi|126 MLGKDYMLAIILVNCDDDLWGDHSLEVEAGL 10 20 30 70 80 90 100 110 120 bm0586 PPGWRKIHDAAGTYYWHVPSGSTQWQRPTWELGDAEDPGTGTEGIWGLRPPKGRSFSSLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 PPGWRKIHDAAGTYYWHVPSGSTQWQRPTWELGDAEDPGTGTEGIWGLRPPKGRSFSSLE 40 50 60 70 80 90 130 140 150 160 170 180 bm0586 SSLDRSNSLSWYGGESYIQSMEPGAKCFAVRSLGWVEVPEEDLAPGKSSIAVNNCIQQLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 SSLDRSNSLSWYGGESYIQSMEPGAKCFAVRSLGWVEVPEEDLAPGKSSIAVNNCIQQLA 100 110 120 130 140 150 190 200 210 220 230 240 bm0586 QTRSRSQPPDGAWGEGQNMLMILKKDAMSLVNPLDHSLIHCQPLVHIRVWGVGSSKGRDR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 QTRSRSQPPDGAWGEGQNMLMILKKDAMSLVNPLDHSLIHCQPLVHIRVWGVGSSKGRDR 160 170 180 190 200 210 250 260 270 280 290 300 bm0586 DFAFVASDKDSCMLKCHVFCCDVPAKAIASALHGLCAQILSERVEVSGDASCCSPDPISP ::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::: gi|126 DFAFVASDKDSCMLKCHVFRCDVPAKAIASALHGLCAQILSERVEVSGDASCCSPDPISP 220 230 240 250 260 270 310 320 330 340 350 360 bm0586 EDLPRQVELLDAVSQAAQKYEALYMGTLPVTKAMGMDVLNEAIGTLTARGDRNAWVPTML :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 EDLPRQVELLDAVSQAAQKYEALYMGTLPVTKAMGMDVLNEAIGTLTARGDRNAWVPTML 280 290 300 310 320 330 370 380 390 400 410 420 bm0586 SVSDSLMTAHPIQAEASTEEEPLWQCPVRLVTFIGVGRDPHTFGLIADLGRQSFQCAAFW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 SVSDSLMTAHPIQAEASTEEEPLWQCPVRLVTFIGVGRDPHTFGLIADLGRQSFQCAAFW 340 350 360 370 380 390 430 440 450 460 470 480 bm0586 CQPHAGGLSEAVQAACMVQYQKCLVASAARGKAWGAQARARLRLKRTSSMDSPGGPLPLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 CQPHAGGLSEAVQAACMVQYQKCLVASAARGKAWGAQARARLRLKRTSSMDSPGGPLPLP 400 410 420 430 440 450 490 500 510 bm0586 LLKGGVGGAGATPRKRGVFSFLDAFRLKPSLLHMP ::::::::::::::::::::::::::::::::::: gi|126 LLKGGVGGAGATPRKRGVFSFLDAFRLKPSLLHMP 460 470 480 >>gi|15341938|gb|AAH13158.1| Amyloid beta (A4) precursor (486 aa) initn: 3365 init1: 3365 opt: 3365 Z-score: 3967.9 bits: 743.7 E(): 2.3e-212 Smith-Waterman score: 3365; 99.588% identity (99.794% similar) in 486 aa overlap (30-515:1-486) 10 20 30 40 50 60 bm0586 GWACRRSSSRGRAGLRVRAGRGWRGAAGVMLGKDYMLAIILVNCDDDLWGDHSLEVEAGL ::::::::::::::::::::::::::::::: gi|153 MLGKDYMLAIILVNCDDDLWGDHSLEVEAGL 10 20 30 70 80 90 100 110 120 bm0586 PPGWRKIHDAAGTYYWHVPSGSTQWQRPTWELGDAEDPGTGTEGIWGLRPPKGRSFSSLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|153 PPGWRKIHDAAGTYYWHVPSGSTQWQRPTWELGDAEDPGTGTEGIWGLRPPKGRSFSSLE 40 50 60 70 80 90 130 140 150 160 170 180 bm0586 SSLDRSNSLSWYGGESYIQSMEPGAKCFAVRSLGWVEVPEEDLAPGKSSIAVNNCIQQLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|153 SSLDRSNSLSWYGGESYIQSMEPGAKCFAVRSLGWVEVPEEDLAPGKSSIAVNNCIQQLA 100 110 120 130 140 150 190 200 210 220 230 240 bm0586 QTRSRSQPPDGAWGEGQNMLMILKKDAMSLVNPLDHSLIHCQPLVHIRVWGVGSSKGRDR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|153 QTRSRSQPPDGAWGEGQNMLMILKKDAMSLVNPLDHSLIHCQPLVHIRVWGVGSSKGRDR 160 170 180 190 200 210 250 260 270 280 290 300 bm0586 DFAFVASDKDSCMLKCHVFCCDVPAKAIASALHGLCAQILSERVEVSGDASCCSPDPISP ::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::: gi|153 DFAFVASDKDSCMLKCHVFRCDVPAKAIASALHGLCAQILSERVEVSGDASCCSPDPISP 220 230 240 250 260 270 310 320 330 340 350 360 bm0586 EDLPRQVELLDAVSQAAQKYEALYMGTLPVTKAMGMDVLNEAIGTLTARGDRNAWVPTML :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|153 EDLPRQVELLDAVSQAAQKYEALYMGTLPVTKAMGMDVLNEAIGTLTARGDRNAWVPTML 280 290 300 310 320 330 370 380 390 400 410 420 bm0586 SVSDSLMTAHPIQAEASTEEEPLWQCPVRLVTFIGVGRDPHTFGLIADLGRQSFQCAAFW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|153 SVSDSLMTAHPIQAEASTEEEPLWQCPVRLVTFIGVGRDPHTFGLIADLGRQSFQCAAFW 340 350 360 370 380 390 430 440 450 460 470 480 bm0586 CQPHAGGLSEAVQAACMVQYQKCLVASAARGKAWGAQARARLRLKRTSSMDSPGGPLPLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|153 CQPHAGGLSEAVQAACMVQYQKCLVASAARGKAWGAQARARLRLKRTSSMDSPGGPLPLP 400 410 420 430 440 450 490 500 510 bm0586 LLKGGVGGAGATPRKRGVFSFLDAFRLKPSLLHMP ::::::::::::::::::::.:::::::::::::: gi|153 LLKGGVGGAGATPRKRGVFSLLDAFRLKPSLLHMP 460 470 480 >>gi|95147538|ref|NP_006042.3| amyloid beta precursor pr (493 aa) initn: 3375 init1: 1893 opt: 3365 Z-score: 3967.8 bits: 743.7 E(): 2.3e-212 Smith-Waterman score: 3365; 98.580% identity (98.580% similar) in 493 aa overlap (30-515:1-493) 10 20 30 40 50 60 bm0586 GWACRRSSSRGRAGLRVRAGRGWRGAAGVMLGKDYMLAIILVNCDDDLWGDHSLEVEAGL ::::::::::::::::::::::::::::::: gi|951 MLGKDYMLAIILVNCDDDLWGDHSLEVEAGL 10 20 30 70 80 90 100 110 120 bm0586 PPGWRKIHDAAGTYYWHVPSGSTQWQRPTWELGDAEDPGTGTEGIWGLRPPKGRSFSSLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|951 PPGWRKIHDAAGTYYWHVPSGSTQWQRPTWELGDAEDPGTGTEGIWGLRPPKGRSFSSLE 40 50 60 70 80 90 130 140 150 160 170 180 bm0586 SSLDRSNSLSWYGGESYIQSMEPGAKCFAVRSLGWVEVPEEDLAPGKSSIAVNNCIQQLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|951 SSLDRSNSLSWYGGESYIQSMEPGAKCFAVRSLGWVEVPEEDLAPGKSSIAVNNCIQQLA 100 110 120 130 140 150 190 200 210 220 230 bm0586 QTRSRSQPPDGAWGEGQNMLMILKKDAMSLVNPLDHSLIHCQPLVHIRVWGVGSSKGRD- ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|951 QTRSRSQPPDGAWGEGQNMLMILKKDAMSLVNPLDHSLIHCQPLVHIRVWGVGSSKGRDS 160 170 180 190 200 210 240 250 260 270 280 290 bm0586 ------RDFAFVASDKDSCMLKCHVFCCDVPAKAIASALHGLCAQILSERVEVSGDASCC :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|951 PISAPARDFAFVASDKDSCMLKCHVFCCDVPAKAIASALHGLCAQILSERVEVSGDASCC 220 230 240 250 260 270 300 310 320 330 340 350 bm0586 SPDPISPEDLPRQVELLDAVSQAAQKYEALYMGTLPVTKAMGMDVLNEAIGTLTARGDRN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|951 SPDPISPEDLPRQVELLDAVSQAAQKYEALYMGTLPVTKAMGMDVLNEAIGTLTARGDRN 280 290 300 310 320 330 360 370 380 390 400 410 bm0586 AWVPTMLSVSDSLMTAHPIQAEASTEEEPLWQCPVRLVTFIGVGRDPHTFGLIADLGRQS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|951 AWVPTMLSVSDSLMTAHPIQAEASTEEEPLWQCPVRLVTFIGVGRDPHTFGLIADLGRQS 340 350 360 370 380 390 420 430 440 450 460 470 bm0586 FQCAAFWCQPHAGGLSEAVQAACMVQYQKCLVASAARGKAWGAQARARLRLKRTSSMDSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|951 FQCAAFWCQPHAGGLSEAVQAACMVQYQKCLVASAARGKAWGAQARARLRLKRTSSMDSP 400 410 420 430 440 450 480 490 500 510 bm0586 GGPLPLPLLKGGVGGAGATPRKRGVFSFLDAFRLKPSLLHMP :::::::::::::::::::::::::::::::::::::::::: gi|951 GGPLPLPLLKGGVGGAGATPRKRGVFSFLDAFRLKPSLLHMP 460 470 480 490 515 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Fri Aug 8 01:40:37 2008 done: Fri Aug 8 01:42:55 2008 Total Scan time: 875.210 Total Display time: 0.170 Function used was FASTA [version 34.26.5 April 26, 2007]