hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-01425602/chunk_1/iprscan-20080808-01425602.nocrc
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Query sequence: bm05861
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00640.13.ls Phosphotyrosine interaction domain (PTB/PID)   335.0    1.2e-97   2
PF00640.13.fs Phosphotyrosine interaction domain (PTB/PID)   331.3    3.5e-97   2
PF00397.16.fs WW domain                                       39.2    5.3e-10   1
PF00397.16.ls WW domain                                       41.2    3.4e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00397.16.fs   1/1      60    88 ..     1    30 []    39.2  5.3e-10
PF00397.16.ls   1/1      60    88 ..     1    30 []    41.2  3.4e-09
PF00640.13.fs   1/2     148   286 ..     1   165 []   174.6  4.4e-51
PF00640.13.ls   1/2     148   286 ..     1   165 []   176.5  6.3e-50
PF00640.13.ls   2/2     320   446 ..     1   165 []   158.5  1.6e-44
PF00640.13.fs   2/2     320   446 ..     1   165 []   156.7  7.8e-46

Alignments of top-scoring domains:
PF00397.16.fs: domain 1 of 1, from 60 to 88: score 39.2, E = 5.3e-10
                   *->lppgWeertdpdGrpYYyNhnTktTqWekP<-*
                      lppgW ++ d+ G +YY++  +++TqW++P   
     bm05861    60    LPPGWRKIHDAAG-TYYWHVPSGSTQWQRP    88   

PF00397.16.ls: domain 1 of 1, from 60 to 88: score 41.2, E = 3.4e-09
                   *->lppgWeertdpdGrpYYyNhnTktTqWekP<-*
                      lppgW ++ d+ G +YY++  +++TqW++P   
     bm05861    60    LPPGWRKIHDAAG-TYYWHVPSGSTQWQRP    88   

PF00640.13.fs: domain 1 of 2, from 148 to 286: score 174.6, E = 4.4e-51
                   *->FevkYLGsveVpeemrapdkntRmdvaneAisrvkmavpgKkpkakk
                      F+v++LG+veVpee++ap+k+  + ++n++i+++++           
     bm05861   148    FAVRSLGWVEVPEEDLAPGKS--SIAVNNCIQQLAQT---------- 182  

                   ikrikgsrgerqpgtkidLsistdglklldekteaekevlhdhplrkISF
                   ++r+++ +g++++g+++++ +++d+++l+++ +   ++++h++pl++I++
     bm05861   183 RSRSQPPDGAWGEGQNMLMILKKDAMSLVNPLD---HSLIHCQPLVHIRV 229  

                   iavggDpdVdlrtFayarrsqdiiaadgatgkfaCHvFecekgkqlAedi
                   ++vg+ +  ++r+Fa+       +a d+++++++CHvF c+    +A++i
     bm05861   230 WGVGSSKG-RDRDFAF-------VASDKDSCMLKCHVFCCDV---PAKAI 268  

                   aqavGqAFevaYqeflra<-*
                   a+a++ +++++++e+++    
     bm05861   269 ASALHGLCAQILSERVEV    286  

PF00640.13.ls: domain 1 of 2, from 148 to 286: score 176.5, E = 6.3e-50
                   *->FevkYLGsveVpeemrapdkntRmdvaneAisrvkmavpgKkpkakk
                      F+v++LG+veVpee++ap+k+  + ++n++i+++++           
     bm05861   148    FAVRSLGWVEVPEEDLAPGKS--SIAVNNCIQQLAQT---------- 182  

                   ikrikgsrgerqpgtkidLsistdglklldekteaekevlhdhplrkISF
                   ++r+++ +g++++g+++++ +++d+++l+++ +   ++++h++pl++I++
     bm05861   183 RSRSQPPDGAWGEGQNMLMILKKDAMSLVNPLD---HSLIHCQPLVHIRV 229  

                   iavggDpdVdlrtFayarrsqdiiaadgatgkfaCHvFecekgkqlAedi
                   ++vg+ +  ++r+Fa+       +a d+++++++CHvF c+    +A++i
     bm05861   230 WGVGSSKG-RDRDFAF-------VASDKDSCMLKCHVFCCDV---PAKAI 268  

                   aqavGqAFevaYqeflra<-*
                   a+a++ +++++++e+++    
     bm05861   269 ASALHGLCAQILSERVEV    286  

PF00640.13.ls: domain 2 of 2, from 320 to 446: score 158.5, E = 1.6e-44
                   *->FevkYLGsveVpeemrapdkntRmdvaneAisrvkmavpgKkpkakk
                      +e+ Y+G ++V+++m+       mdv+neAi  + ++          
     bm05861   320    YEALYMGTLPVTKAMG-------MDVLNEAIGTLTAR---------- 349  

                   ikrikgsrgerqpgtkidLsistdglklldektea..ekevlhdhplrkI
                           g+r+++++ +Ls+s++ ++ + ++ ea++e+e+l+++p+r +
     bm05861   350 --------GDRNAWVPTMLSVSDSLMTAHPIQAEAstEEEPLWQCPVRLV 391  

                   SFiavggDpdVdlrtFayarrsqdiiaadgatgkfaCHvFecekgkqlAe
                    Fi+vg+Dp+    tF++        +ad + + f+C +F+c++   +A+
     bm05861   392 TFIGVGRDPH----TFGL--------IADLGRQSFQCAAFWCQP---HAG 426  

                   diaqavGqAFevaYqeflra<-*
                    +++av++A++v+Yq++l+a   
     bm05861   427 GLSEAVQAACMVQYQKCLVA    446  

PF00640.13.fs: domain 2 of 2, from 320 to 446: score 156.7, E = 7.8e-46
                   *->FevkYLGsveVpeemrapdkntRmdvaneAisrvkmavpgKkpkakk
                      +e+ Y+G ++V+++m+       mdv+neAi  + ++          
     bm05861   320    YEALYMGTLPVTKAMG-------MDVLNEAIGTLTAR---------- 349  

                   ikrikgsrgerqpgtkidLsistdglklldektea..ekevlhdhplrkI
                           g+r+++++ +Ls+s++ ++ + ++ ea++e+e+l+++p+r +
     bm05861   350 --------GDRNAWVPTMLSVSDSLMTAHPIQAEAstEEEPLWQCPVRLV 391  

                   SFiavggDpdVdlrtFayarrsqdiiaadgatgkfaCHvFecekgkqlAe
                    Fi+vg+Dp+    tF++        +ad + + f+C +F+c++   +A+
     bm05861   392 TFIGVGRDPH----TFGL--------IADLGRQSFQCAAFWCQP---HAG 426  

                   diaqavGqAFevaYqeflra<-*
                    +++av++A++v+Yq++l+a   
     bm05861   427 GLSEAVQAACMVQYQKCLVA    446  

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