hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-01425602/chunk_1/iprscan-20080808-01425602.nocrc
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Query sequence: bm05861
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00462                                                 249.5    2.8e-70   2
SM00456                                                  39.4    4.7e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00456    1/1      59    90 ..     1    34 []    39.4  4.7e-07
SM00462    1/2     143   289 ..     1   156 []   131.0  1.3e-34
SM00462    2/2     315   449 ..     1   156 []   118.5  7.5e-31

Alignments of top-scoring domains:
SM00456: domain 1 of 1, from 59 to 90: score 39.4, E = 4.7e-07
                   *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-*
                      +lPpgW ++ d++   +YY+++ ++ tqW++P++   
     bm05861    59    GLPPGWRKIHDAA--GTYYWHVPSGSTQWQRPTW    90   

SM00462: domain 1 of 2, from 143 to 289: score 131.0, E = 1.3e-34
                   *->segvsfeVkYLGsvevpearkSlapgkglqvlqeairklr.......
                      + +++f V+ LG+vevpe++  lapgk++ +++++i++l++++++++
     bm05861   143    PGAKCFAVRSLGWVEVPEED--LAPGKSSIAVNNCIQQLAqtrsrsq 187  

                   ...sekkkpqkvilsvSsdgvklidektkqvlaehplrrIsfcaadpqrw
                   ++++ ++++q++++ + +d+++l+++ ++ +++++pl +I+++++++   
     bm05861   188 ppdGAWGEGQNMLMILKKDAMSLVNPLDHSLIHCQPLVHIRVWGVGS--- 234  

                   ntGgdgstdddrvFgyiardpgssgSnrgtsrfaCHVFrcekaaaedial
                         s+  dr F+++a d++s+       +++CHVF c+ +a ++ia+
     bm05861   235 ------SKGRDRDFAFVASDKDSC-------MLKCHVFCCDVPA-KAIAS 270  

                   aigqaFqvayelklkarse<-*
                   a++ +++++ +++   + +   
     bm05861   271 ALHGLCAQILSERVEVSGD    289  

SM00462: domain 2 of 2, from 315 to 449: score 118.5, E = 7.5e-31
                   *->segvsfeVkYLGsvevpearkSlapgkglqvlqeairklr..sekkk
                      ++++++e++Y+G+++v++a+       g++vl+eai +l  ++++ +
     bm05861   315    QAAQKYEALYMGTLPVTKAM-------GMDVLNEAIGTLTarGDRNA 354  

                   pqkvilsvSsdgvklidektk.....qvlaehplrrIsfcaadpqrwntG
                   +++ +lsvS++ ++ +  + + +++++ l+++p+r ++f++++       
     bm05861   355 WVPTMLSVSDSLMTAHPIQAEasteeEPLWQCPVRLVTFIGVG------- 397  

                   gdgstdddrvFgyiardpgssgSnrgtsrfaCHVFrcekaaaedialaig
                        +d+++Fg+ia  + +         f+C +F+c+++a   +++a++
     bm05861   398 -----RDPHTFGLIADLGRQ--------SFQCAAFWCQPHA-GGLSEAVQ 433  

                   qaFqvayelklkarse<-*
                   +a++v+y+++l+a+ +   
     bm05861   434 AACMVQYQKCLVASAA    449  

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