hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-01485108/chunk_1/iprscan-20080808-01485108.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: bm05940
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02177.7.fs Amyloid A4 extracellular domain                415.0   2.2e-199   1
PF02177.7.ls Amyloid A4 extracellular domain                416.9   2.6e-122   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02177.7.fs   1/1      52   217 ..     1   182 []   415.0 2.2e-199
PF02177.7.ls   1/1      52   217 ..     1   182 []   416.9 2.6e-122

Alignments of top-scoring domains:
PF02177.7.fs: domain 1 of 1, from 52 to 217: score 415.0, E = 2.2e-199
                   *->gaaeakaePQiAmlCGAGqirlnqhmneetGrWetDpsrtktGPtCL
                      gaaea++++Q+A+lCG    rl++h++++tGrWe+Dp+r++   +CL
     bm05940    52    GAAEAPGSAQVAGLCG----RLTLHRDLRTGRWEPDPQRSR---RCL 91   

                   rdKedvLqYCrkaYPelqITNvvEasqpvkIedWCrrgALnrsqCkahph
                   rd+++vL+YCr++YPelqI++v++a+q++++e+WC+++   rs+++ahph
     bm05940    92 RDPQRVLEYCRQMYPELQIARVEQATQAIPMERWCGGS---RSGSCAHPH 138  

                   hsViPFrCLvGEFvSdALLVPegCqFlHqermdqCeshqrWhqeakeaCs
                   h+V+PFrCL+GEFvS+ALLVPegC+FlHqermdqCes++r+hqea+eaCs
     bm05940   139 HQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRHQEAQEACS 188  

                   ekkskGnkgmilrsfgMLLPCGiDkFrGVEFVCCP<-*
                   ++      g+il+++gMLLPCG+D+FrGVE+VCCP   
     bm05940   189 SQ------GLILHGSGMLLPCGSDRFRGVEYVCCP    217  

PF02177.7.ls: domain 1 of 1, from 52 to 217: score 416.9, E = 2.6e-122
                   *->gaaeakaePQiAmlCGAGqirlnqhmneetGrWetDpsrtktGPtCL
                      gaaea++++Q+A+lCG    rl++h++++tGrWe+Dp+r++   +CL
     bm05940    52    GAAEAPGSAQVAGLCG----RLTLHRDLRTGRWEPDPQRSR---RCL 91   

                   rdKedvLqYCrkaYPelqITNvvEasqpvkIedWCrrgALnrsqCkahph
                   rd+++vL+YCr++YPelqI++v++a+q++++e+WC+++   rs+++ahph
     bm05940    92 RDPQRVLEYCRQMYPELQIARVEQATQAIPMERWCGGS---RSGSCAHPH 138  

                   hsViPFrCLvGEFvSdALLVPegCqFlHqermdqCeshqrWhqeakeaCs
                   h+V+PFrCL+GEFvS+ALLVPegC+FlHqermdqCes++r+hqea+eaCs
     bm05940   139 HQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRHQEAQEACS 188  

                   ekkskGnkgmilrsfgMLLPCGiDkFrGVEFVCCP<-*
                   ++      g+il+++gMLLPCG+D+FrGVE+VCCP   
     bm05940   189 SQ------GLILHGSGMLLPCGSDRFRGVEYVCCP    217  

//