hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-01485108/chunk_1/iprscan-20080808-01485108.nocrc
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Query sequence: bm05940
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00006                                                 415.0   4.1e-120   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00006      1/1      52   217 ..     1   180 []   415.0 4.1e-120

Alignments of top-scoring domains:
SM00006: domain 1 of 1, from 52 to 217: score 415.0, E = 4.1e-120
                   *->gaaeakaePQiAmlCGrlnlhmnlqtseeGrWetDpsrtktGPtCLr
                      gaaea++++Q+A+lCGrl+lh++l+t   GrWe+Dp+r+++   CLr
     bm05940    52    GAAEAPGSAQVAGLCGRLTLHRDLRT---GRWEPDPQRSRR---CLR 92   

                   dKedvLqYCrkaYPelqITNvvEasqpvkIedWCrrgrsnAAqCkghhhs
                   d+++vL+YCr++YPelqI++v++a+q++++e+WC+++rs+  +C+++hh+
     bm05940    93 DPQRVLEYCRQMYPELQIARVEQATQAIPMERWCGGSRSG--SCAHPHHQ 140  

                   ViPFrCLvGEFvSdALLVPegCqFlHqermdqCedhqrWhqeakeaCsek
                   V+PFrCL+GEFvS+ALLVPegC+FlHqermdqCe+++r+hqea+eaCs++
     bm05940   141 VVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRHQEAQEACSSQ 190  

                   kskGnkgmilrsfgMLLPCGiDkFrGVEFVCCP<-*
                         g+il+++gMLLPCG+D+FrGVE+VCCP   
     bm05940   191 ------GLILHGSGMLLPCGSDRFRGVEYVCCP    217  

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