hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-02013155/chunk_1/iprscan-20080808-02013155.nocrc
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Query sequence: bm05945
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00036.22.ls EF hand                                         98.5    1.8e-26   3
PF00036.22.fs EF hand                                         96.6      7e-26   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00036.22.fs   2/4      70    98 ..     1    29 []    29.3    6e-07
PF00036.22.ls   1/3      70    98 ..     1    29 []    31.3    3e-06
PF00036.22.fs   3/4     106   134 ..     1    29 []    32.3  9.3e-08
PF00036.22.ls   2/3     106   134 ..     1    29 []    34.3  3.9e-07
PF00036.22.fs   4/4     154   182 ..     1    29 []    30.9  2.2e-07
PF00036.22.ls   3/3     154   182 ..     1    29 []    32.9    1e-06

Alignments of top-scoring domains:
PF00036.22.fs: domain 2 of 4, from 70 to 98: score 29.3, E = 6e-07
                   *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
                       ++ +F+ fD++gDG+I+f Ef+ al+ +   
     bm05945    70    FAEHVFRTFDTNGDGTIDFREFIIALSVT    98   

PF00036.22.ls: domain 1 of 3, from 70 to 98: score 31.3, E = 3e-06
                   *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
                       ++ +F+ fD++gDG+I+f Ef+ al+ +   
     bm05945    70    FAEHVFRTFDTNGDGTIDFREFIIALSVT    98   

PF00036.22.fs: domain 3 of 4, from 106 to 134: score 32.3, E = 9.3e-08
                   *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
                      +lk aF+++D Dg+G+Is+ E++++++++   
     bm05945   106    KLKWAFSMYDLDGNGYISRSEMLEIVQAI    134  

PF00036.22.ls: domain 2 of 3, from 106 to 134: score 34.3, E = 3.9e-07
                   *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
                      +lk aF+++D Dg+G+Is+ E++++++++   
     bm05945   106    KLKWAFSMYDLDGNGYISRSEMLEIVQAI    134  

PF00036.22.fs: domain 4 of 4, from 154 to 182: score 30.9, E = 2.2e-07
                   *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
                      + +++F+++D+++DGk+s+eEf+++ k+    
     bm05945   154    RTDKIFRQMDTNNDGKLSLEEFIRGAKSD    182  

PF00036.22.ls: domain 3 of 3, from 154 to 182: score 32.9, E = 1e-06
                   *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
                      + +++F+++D+++DGk+s+eEf+++ k+    
     bm05945   154    RTDKIFRQMDTNNDGKLSLEEFIRGAKSD    182  

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