hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-02013155/chunk_1/iprscan-20080808-02013155.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: bm05945
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00054                                                 100.5      2e-25   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00054    1/3      70    98 ..     1    29 []    29.9  0.00035
SM00054    2/3     106   134 ..     1    29 []    38.7  7.9e-07
SM00054    3/3     154   182 ..     1    29 []    31.8  9.1e-05

Alignments of top-scoring domains:
SM00054: domain 1 of 3, from 70 to 98: score 29.9, E = 0.00035
                   *->elkeaFrefDkDgdGkIdfeEfkallksl<-*
                        + +Fr fD++gdG+Idf Ef+ +l+     
     bm05945    70    FAEHVFRTFDTNGDGTIDFREFIIALSVT    98   

SM00054: domain 2 of 3, from 106 to 134: score 38.7, E = 7.9e-07
                   *->elkeaFrefDkDgdGkIdfeEfkallksl<-*
                      +lk+aF+++D Dg+G+I+  E++++++++   
     bm05945   106    KLKWAFSMYDLDGNGYISRSEMLEIVQAI    134  

SM00054: domain 3 of 3, from 154 to 182: score 31.8, E = 9.1e-05
                   *->elkeaFrefDkDgdGkIdfeEfkallksl<-*
                        +++Fr +D+++dGk+++eEf+++ ks    
     bm05945   154    RTDKIFRQMDTNNDGKLSLEEFIRGAKSD    182  

//