hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-01292253/chunk_1/iprscan-20090618-01292253.nocrc
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Query sequence: bm05954
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00071.12.fs Ras family                                      76.2    1.9e-22   2
PF08477.3.fs Miro-like protein                               75.7    1.6e-21   1
PF08477.3.ls Miro-like protein                               77.5    3.9e-20   1
PF00071.12.ls Ras family                                      59.8    8.1e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF08477.3.fs   1/1      52   172 ..     1   139 []    75.7  1.6e-21
PF00071.12.fs   1/2      52    80 ..     1    29 [.    33.7  8.5e-10
PF00071.12.ls   1/1      52   220 ..     1   174 []    59.8  8.1e-15
PF08477.3.ls   1/1      52   172 ..     1   139 []    77.5  3.9e-20
PF00071.12.fs   2/2     128   199 ..    72   154 ..    42.5    2e-12

Alignments of top-scoring domains:
PF08477.3.fs: domain 1 of 1, from 52 to 172: score 75.7, E = 1.6e-21
                   *->kvvViGdkgvGKSSllqallgeefppniPrvLpkkklpreiqgstya
                      k++V+G+ gvGK++l++++l+  f             + e + ++++
     bm05954    52    KIAVVGASGVGKTALVVRFLTKRFI-----------GDYERNAGNLY 87   

                   vdtlevdgdtklenvrlkefllilwDtggr..........eelkfehepi
                      ++++g t           l ++Dt+g + ++++ + +e+l +     
     bm05954    88 TRQVQIEGETLA---------LQVQDTPGIqvhenslscsEQLNR----- 123  

                   AymktaDavllvyDlsdpeSfervsslikwlpnlrklgkkaiPvilvgnK
                    ++ +aDav++v++ +d++S+e  s l+ + ++l  lg   +Pv++v+nK
     bm05954   124 -CIRWADAVVIVFSITDYKSYELISQLHQHVQQLH-LGTR-LPVVVVANK 170  

                   lD<-*
                   +D   
     bm05954   171 AD    172  

PF00071.12.fs: domain 1 of 2, from 52 to 80: score 33.7, E = 8.5e-10
                   *->KlVlvGDgGVGKSsLliRFtdnkFpeeYi<-*
                      K+ +vG +GVGK++L++RF +++F  +Y+   
     bm05954    52    KIAVVGASGVGKTALVVRFLTKRFIGDYE    80   

PF00071.12.ls: domain 1 of 1, from 52 to 220: score 59.8, E = 8.1e-15
                   *->KlVlvGDgGVGKSsLliRFtdnkFpeeYipTIGvDFytktvevdgkt
                      K+ +vG +GVGK++L++RF +++F  +Y+       yt++v ++g+t
     bm05954    52    KIAVVGASGVGKTALVVRFLTKRFIGDYERNA-GNLYTRQVQIEGET 97   

                   vkLqIWDTAGQErFralrpa.........YYRgAqGfLLVYDITsrdSFe
                     Lq+ DT G    +    + + +++ +++ R A+++++V++IT+ +S+e
     bm05954    98 LALQVQDTPG---IQVHENSlscseqlnrCIRWADAVVIVFSITDYKSYE 144  

                   nvkkWleeilr.hadkdenvpivLVGNKcDLeddedlelekqkRqVstee
                    + + ++ +++ h +  +  p+v V NK+DL +          +qV+++ 
     bm05954   145 LISQLHQHVQQlHLG--TRLPVVVVANKADLLH---------IKQVDPQL 183  

                   GealAkelgAlpFmETSAKtneN.VeeaFeelareilk<-*
                   G +lA  lg + F+E S  +n+N+V  aF  l +e+     
     bm05954   184 GLQLASMLG-CSFYEVSVSENYNdVYSAFHVLCKEVSH    220  

PF08477.3.ls: domain 1 of 1, from 52 to 172: score 77.5, E = 3.9e-20
                   *->kvvViGdkgvGKSSllqallgeefppniPrvLpkkklpreiqgstya
                      k++V+G+ gvGK++l++++l+  f             + e + ++++
     bm05954    52    KIAVVGASGVGKTALVVRFLTKRFI-----------GDYERNAGNLY 87   

                   vdtlevdgdtklenvrlkefllilwDtggr..........eelkfehepi
                      ++++g t           l ++Dt+g + ++++ + +e+l +     
     bm05954    88 TRQVQIEGETLA---------LQVQDTPGIqvhenslscsEQLNR----- 123  

                   AymktaDavllvyDlsdpeSfervsslikwlpnlrklgkkaiPvilvgnK
                    ++ +aDav++v++ +d++S+e  s l+ + ++l  lg   +Pv++v+nK
     bm05954   124 -CIRWADAVVIVFSITDYKSYELISQLHQHVQQLH-LGTR-LPVVVVANK 170  

                   lD<-*
                   +D   
     bm05954   171 AD    172  

PF00071.12.fs: domain 2 of 2, from 128 to 199: score 42.5, E = 2e-12
                   *->AqGfLLVYDITsrdSFenvkkWleeilr.hadkdenvpivLVGNKcD
                      A+++++V++IT+ +S+e + + ++ +++ h +  +  p+v V NK+D
     bm05954   128    ADAVVIVFSITDYKSYELISQLHQHVQQlHLG--TRLPVVVVANKAD 172  

                   LeddedlelekqkRqVsteeGealAkelgAlpFmETS<-*
                   L +          +qV+++ G +lA  lg + F+E S   
     bm05954   173 LLH---------IKQVDPQLGLQLASMLG-CSFYEVS    199  

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