hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-01292253/chunk_1/iprscan-20090618-01292253.nocrc
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Query sequence: bm05954
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00173                                                  98.2    9.7e-25   1
SM00175                                                  16.4    4.2e-10   1
SM00174                                                 -45.6    1.3e-05   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00173     1/1      48   221 ..     1   167 []    98.2  9.7e-25
SM00175     1/1      51   221 ..     1   172 []    16.4  4.2e-10
SM00174     1/1      53   221 ..     1   180 []   -45.6  1.3e-05

Alignments of top-scoring domains:
SM00173: domain 1 of 1, from 48 to 221: score 98.2, E = 9.7e-25
                   *->mreYKlVVlGgGGVGKSALTiQFiqghFvdeYDPTIEDSYrKqieiD
                       r  K++V+G+ GVGK+AL+++F +++F+ +Y+    + Y++q++i 
     bm05954    48    RRLVKIAVVGASGVGKTALVVRFLTKRFIGDYERNAGNLYTRQVQIE 94   

                   gevalLDILDTAGQ..eEFs.AMRdq...YmRtGeGFlLVYSitsrqSFe
                   ge+  L++ DT G + +E s    +q ++++R  +  ++V+Sit+ +S+e
     bm05954    95 GETLALQVQDTPGIqvHENSlSCSEQlnrCIRWADAVVIVFSITDYKSYE 144  

                   eikkfreqIlRVKdrddvPivLVGNKcDLeneRqVsteEGkeLAkqlncp
                    i++++++++      + P+v+V+NK+DL +  qV  + G +LA  l+c 
     bm05954   145 LISQLHQHVQQLHLGTRLPVVVVANKADLLHIKQVDPQLGLQLASMLGCS 194  

                   FlEtSAKerin.VdeaFydLVReirks<-*
                   F+E S  e+ n+V  aF+ L +e+  +   
     bm05954   195 FYEVSVSENYNdVYSAFHVLCKEVSHK    221  

SM00175: domain 1 of 1, from 51 to 221: score 16.4, E = 4.2e-10
                   *->FKiilIGDSGVGKSsLLsRFtddkFsedsksTIGVDFktktievdGk
                       Ki ++G SGVGK+ L+ RF +++F  d++   G    t+ ++++G 
     bm05954    51    VKIAVVGASGVGKTALVVRFLTKRFIGDYERNAG-NLYTRQVQIEGE 96   

                   rvKLQIWDTAG.QERFRSiTss.....YYRGAvGalLVYDiTnreSFenl
                   +  LQ+ DT G Q    S+  s++ ++  R A+++++V+ iT+ +S+e +
     bm05954    97 TLALQVQDTPGiQVHENSLSCSeqlnrCIRWADAVVIVFSITDYKSYELI 146  

                   knWlkelreyadpp..penvvimLVGNKsDLeeqRqVstEeaekficDcA
                       ++l ++ ++ + +   ++++V+NK+DL +  qV+ + + ++    A
     bm05954   147 ----SQLHQHVQQLhlGTRLPVVVVANKADLLHIKQVDPQLGLQL----A 188  

                   eehgllFifETSAKtntN.VeeAFeelakkIlkr<-*
                     +g++F+ E+S  +n N+V  AF+ l k++ ++   
     bm05954   189 SMLGCSFY-EVSVSENYNdVYSAFHVLCKEVSHK    221  

SM00174: domain 1 of 1, from 53 to 221: score -45.6, E = 1.3e-05
                   *->lVvVGDGaVGKTCLLisYTtnaFPedYVPTVFENYsadvevpDgkpv
                      + vVG ++VGKT+L +++ t  F  dY       Y+ +v++ +g++ 
     bm05954    53    IAVVGASGVGKTALVVRFLTKRFIGDYERNAGNLYTRQVQI-EGETL 98   

                   nLgLWDTAG..........QEdYDRLRPLSYPqtDVfLiCFSVdspaSfe
                    L+  DT G + ++++ + +E   R    +   +D + i FS++   S+e
     bm05954    99 ALQVQDTPGiqvhenslscSEQLNR----CIRWADAVVIVFSITDYKSYE 144  

                   NVkeKWyPEvkhfcPnv..PiiLVGtKlDLRnDedtleelsekkqePvtt
                    ++   +  v++   +++ P+++V++K+DL    +++    + +      
     bm05954   145 LISQL-HQHVQQLHLGTrlPVVVVANKADLL-HIKQVDPQLGLQ------ 186  

                   eqGeanskialAkeIGAvkYlECSAltqeG.vkeVFeeAiraaLnk<-*
                             lA  +G+  + E S   + ++v   F++  + + +k   
     bm05954   187 ----------LASMLGC-SFYEVSVSENYNdVYSAFHVLCKEVSHK    221  

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