hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-01292253/chunk_1/iprscan-20090618-01292253.nocrc
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Query sequence: bm05954
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
TIGR00231 small_GTP: small GTP-binding protein domain    59.6    3.4e-15   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
TIGR00231   1/1      48   215 ..     1   186 []    59.6  3.4e-15

Alignments of top-scoring domains:
TIGR00231: domain 1 of 1, from 48 to 215: score 59.6, E = 3.4e-15
                   *->lkdikigivGdpnvGkstllnrllgnkgsitesgptdgttrdyvtes
                       + +ki++vG  +vGk++l+ r+l +  +i+ + +      ++ t++
     bm05954    48    RRLVKIAVVGASGVGKTALVVRFLTKR-FIGDY-E--RNAGNLYTRQ 90   

                   ieedgktitgatfqWgykfnllDtpGlhrqedydalrrly...ypevlss
                   ++++g+t           +++ DtpG++ +e     +++ ++ ++ ++++
     bm05954    91 VQIEGET---------LALQVQDTPGIQVHENSLSCSEQLnrcIRWADAV 131  

                   levldlvilvldvedglekdtkeiihhadkygvpillvgnkidlkdekpg
                   + v++++ + +++e + + +  +   h+     p+++v+nk dl + k  
     bm05954   132 VIVFSITDY-KSYELISQLHQHVQQLHLG-TRLPVVVVANKADLLHIK-- 177  

                   yfvdlkphlaslfaklngephfiplsaetgkgidslfglvea<-*
                      +++p+l+  +a + g++ f ++s+    +       v++   
     bm05954   178 ---QVDPQLGLQLASMLGCS-FYEVSVSENYNDVYSAFHVLC    215  

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