hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-02073640/chunk_1/iprscan-20080808-02073640.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: bm05962
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
PF00270.19.ls DEAD/DEAH box helicase                       181.7    1.6e-51   1
PF00270.19.fs DEAD/DEAH box helicase                       179.9    5.8e-51   1
PF00271.21.fs Helicase conserved C-terminal domain          66.4      9e-19   2
PF00271.21.ls Helicase conserved C-terminal domain          52.3    1.5e-12   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PF00270.19.fs   1/1      42   218 ..     1   213 []   179.9  5.8e-51
PF00270.19.ls   1/1      42   218 ..     1   213 []   181.7  1.6e-51
PF00271.21.ls   1/1     288   391 ..     1    76 []    52.3  1.5e-12
PF00271.21.fs   2/2     357   391 ..    42    76 .]    49.1    1e-13

Alignments of top-scoring domains:
PF00270.19.fs: domain 1 of 1, from 42 to 218: score 179.9, E = 5.8e-51
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx x    
                   *->tpiQaeaipaileGrDvlvqApTGSGKTlafllPilqallk.p....
                      t iQ++aip++leG+D+l++A+TGSGKT+a+++P+lq ll+++ +++
     bm05962    42    TLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHrKatgp 88   

                RF   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   ..ennqeskplkkkkdgpqalvlaPTreLaeQiyeelkklgkgiqpdlee
                     e            ++++ lvl+PT+eLa+Q  + +++l+ +      +
     bm05962    89 vvE------------QAVRGLVLVPTKELARQAQSMIQQLATY------C 120  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   llglkvallyGGdsikeqleklDYrlkkglkgkpdIlvgTPgrLldlllk
                    ++++va +    +   q+ +l  +  ++    pd++vgTP r+l++l  
     bm05962   121 ARDVRVANVSAAEDSVSQRAVL--M--EK----PDVVVGTPSRILSHL-- 160  

                RF xxxxxxx xxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   grkrega.sldlknl.kllVlDEAhrlldmkGfgedleeilrrlprpklr
                        + +sl+l++  +llV+DEA++l++  Gf+e+l+++l +lp +   
     bm05962   161 -----QQdSLKLRDSlELLVVDEADLLFSF-GFEEELKSLLCHLP-RI-- 201  

                RF xxxxxxxxxxxxxxxxxxxxxxxxx   
                   rlsqdlpnrqtllfSATlprnvedl<-*
                            q  l+SAT++++v+ l   
     bm05962   202 --------YQAFLMSATFNEDVQAL    218  

PF00270.19.ls: domain 1 of 1, from 42 to 218: score 181.7, E = 1.6e-51
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx x    
                   *->tpiQaeaipaileGrDvlvqApTGSGKTlafllPilqallk.p....
                      t iQ++aip++leG+D+l++A+TGSGKT+a+++P+lq ll+++ +++
     bm05962    42    TLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHrKatgp 88   

                RF   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   ..ennqeskplkkkkdgpqalvlaPTreLaeQiyeelkklgkgiqpdlee
                     e            ++++ lvl+PT+eLa+Q  + +++l+ +      +
     bm05962    89 vvE------------QAVRGLVLVPTKELARQAQSMIQQLATY------C 120  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   llglkvallyGGdsikeqleklDYrlkkglkgkpdIlvgTPgrLldlllk
                    ++++va +    +   q+ +l  +  ++    pd++vgTP r+l++l  
     bm05962   121 ARDVRVANVSAAEDSVSQRAVL--M--EK----PDVVVGTPSRILSHL-- 160  

                RF xxxxxxx xxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   grkrega.sldlknl.kllVlDEAhrlldmkGfgedleeilrrlprpklr
                        + +sl+l++  +llV+DEA++l++  Gf+e+l+++l +lp +   
     bm05962   161 -----QQdSLKLRDSlELLVVDEADLLFSF-GFEEELKSLLCHLP-RI-- 201  

                RF xxxxxxxxxxxxxxxxxxxxxxxxx   
                   rlsqdlpnrqtllfSATlprnvedl<-*
                            q  l+SAT++++v+ l   
     bm05962   202 --------YQAFLMSATFNEDVQAL    218  

PF00271.21.ls: domain 1 of 1, from 288 to 391: score 52.3, E = 1.5e-12
                   *->ll.epgikvarlhGglsqeeReeilekFrngkskvLvaTdv......
                      +l++  i++++l G+l+ + R  i+ +F+ g +++++aTd++  + +
     bm05962   288    FLeQFSIPTCVLNGELPLRSRCHIISQFNQGFYDCVIATDAevlgap 334  

                   .....................agrGiDipdvnlVInydlpwnpesyiQRi
                    +++++++++++++ ++++ + +rGiD+ +v+ V n+dlp +pe yi+R+
     bm05962   335 vkgkrrgrgpkgdkasdpeagVARGIDFHHVSAVLNFDLPPTPEAYIHRA 384  

                   GRaGRaG<-*
                   GR++Ra+   
     bm05962   385 GRTARAN    391  

PF00271.21.fs: domain 2 of 2, from 357 to 391: score 49.1, E = 1e-13
                   *->grGiDipdvnlVInydlpwnpesyiQRiGRaGRaG<-*
                      +rGiD+ +v+ V n+dlp +pe yi+R+GR++Ra+   
     bm05962   357    ARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARAN    391  

//