hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-02073640/chunk_1/iprscan-20080808-02073640.nocrc
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Query sequence: bm05962
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00487                                                 168.4    7.3e-46   1
SM00490                                                  85.5    6.4e-21   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00487      1/1      37   245 ..     1   219 []   168.4  7.3e-46
SM00490      1/1     283   391 ..     1    86 []    85.5  6.4e-21

Alignments of top-scoring domains:
SM00487: domain 1 of 1, from 37 to 245: score 168.4, E = 7.3e-46
                   *->gf.klrpyQkeaipwllegrdvilaapTGsGKTlafllpllellkkg
                      g+++++ +Q++aip +leg+d++++a TGsGKT+a+++p+l+ll+++
     bm05962    37    GWsRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHR 83   

                   kplaskkgkgprvLvlvPtreLaeQwaeelkklgpslgvyfvevlkvvgl
                   k +    + + r LvlvPt+eLa+Q ++ +++l+ +++    ++++v+ +
     bm05962    84 KATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCA----RDVRVANV 129  

                   ygG.sktkekeqlrklksgktdilvtTpgrLldll.ngkglsl.nldlvi
                      ++      q++ l +++ d++v+Tp r+l++l++++  + + l+l++
     bm05962   130 SAAeDS---VSQRAVLMEKP-DVVVGTPSRILSHLqQDSLKLRdSLELLV 175  

                   lDEaHrlldmgsggdhgfgdqle.llkrlpknrqrlllSATpp.eienll
                   +DEa+ l +       gf++ l++ll++lp+  q +l+SAT++++++ l+
     bm05962   176 VDEADLLFSF------GFEEELKsLLCHLPRIYQAFLMSATFNeDVQALK 219  

                   klflnlpelfpnpvfisvgf....tlepieqf<-*
                   +l+l+      npv+++  ++  + ++ ++qf   
     bm05962   220 ELILH------NPVTLKLQEsqlpGPDQLQQF    245  

SM00490: domain 1 of 1, from 283 to 391: score 85.5, E = 6.4e-21
                   *->delaelLkellkdpgikvarlHGglsqeeReeilekFrkgkikvLva
                       +l  +L+++     i+ ++l G+l+ + R  i+ +F+ g +++++a
     bm05962   283    YRLRLFLEQF----SIPTCVLNGELPLRSRCHIISQFNQGFYDCVIA 325  

                   Td...........................vaerGlDipgvdlVInydlpw
                   Td +  + + +++++++++++++ ++++   +rG+D+ +v+ V n+dlp 
     bm05962   326 TDaevlgapvkgkrrgrgpkgdkasdpeaGVARGIDFHHVSAVLNFDLPP 375  

                   spasyiQRiGRaGRaG<-*
                   +p+ yi+R+GR++Ra+   
     bm05962   376 TPEAYIHRAGRTARAN    391  

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