hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-01353583/chunk_1/iprscan-20090618-01353583.nocrc
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Query sequence: bm06111
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02023.7.ls SCAN domain                                    144.3    3.1e-40   1
PF02023.7.fs SCAN domain                                    142.3    1.2e-39   1
PF00096.16.ls Zinc finger, C2H2 type                          48.3    2.4e-11   2
PF00096.16.fs Zinc finger, C2H2 type                          44.4    3.6e-10   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02023.7.fs   1/1      97   192 ..     1    96 []   142.3  1.2e-39
PF02023.7.ls   1/1      97   192 ..     1    96 []   144.3  3.1e-40
PF00096.16.fs   1/2     467   489 ..     1    24 []    24.0  9.9e-05
PF00096.16.ls   1/2     467   489 ..     1    24 []    26.0  0.00013
PF00096.16.ls   2/2     495   517 ..     1    24 []    22.4   0.0015

Alignments of top-scoring domains:
PF02023.7.fs: domain 1 of 1, from 97 to 192: score 142.3, E = 1.2e-39
                   *->pspEifRqrFRqfrYqetsGPrEALsrLReLChqWLrPEvhTKEQIL
                       + E +R+rFR f Yqe++GP   L+rL eLC+qWL PE+++KEQ L
     bm06111    97    ADLEFSRLRFREFVYQEAAGPHQTLARLHELCRQWLMPEARSKEQML 143  

                   ELLVLEQFLtILPkElQawVqehhPeSgEEaVtLlEdLerelDepgqqV<
                   ELLVLEQFL+ILP  ++ wV  ++PeS + a+ L+E L   l+epg    
     bm06111   144 ELLVLEQFLGILPDKVRPWVVAQYPESCKKAASLVEGLADVLEEPGMLL  192  

                   -*
                     
     bm06111     -    -    

PF02023.7.ls: domain 1 of 1, from 97 to 192: score 144.3, E = 3.1e-40
                   *->pspEifRqrFRqfrYqetsGPrEALsrLReLChqWLrPEvhTKEQIL
                       + E +R+rFR f Yqe++GP   L+rL eLC+qWL PE+++KEQ L
     bm06111    97    ADLEFSRLRFREFVYQEAAGPHQTLARLHELCRQWLMPEARSKEQML 143  

                   ELLVLEQFLtILPkElQawVqehhPeSgEEaVtLlEdLerelDepgqqV<
                   ELLVLEQFL+ILP  ++ wV  ++PeS + a+ L+E L   l+epg    
     bm06111   144 ELLVLEQFLGILPDKVRPWVVAQYPESCKKAASLVEGLADVLEEPGMLL  192  

                   -*
                     
     bm06111     -    -    

PF00096.16.fs: domain 1 of 2, from 467 to 489: score 24.0, E = 9.9e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C  +Cg++F   s+L  H  +H   
     bm06111   467    YACG-ECGEAFAWLSHLMEHHSSH    489  

PF00096.16.ls: domain 1 of 2, from 467 to 489: score 26.0, E = 0.00013
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C  +Cg++F   s+L  H  +H   
     bm06111   467    YACG-ECGEAFAWLSHLMEHHSSH    489  

PF00096.16.ls: domain 2 of 2, from 495 to 517: score 22.4, E = 0.0015
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C+ +C k+F  +  L  H++tH   
     bm06111   495    YACQ-GCWKTFHFSLALAEHQKTH    517  

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