hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-01413133/chunk_1/iprscan-20090618-01413133.nocrc
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Query sequence: bm06379
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01342.11.fs SAND domain                                    167.2    3.4e-48   1
PF01342.11.ls SAND domain                                    169.2    9.9e-48   1
PF01753.9.fs MYND finger                                     69.6      9e-22   1
PF01753.9.ls MYND finger                                     71.5    2.5e-18   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01342.11.fs   1/1     187   267 ..     1    86 []   167.2  3.4e-48
PF01342.11.ls   1/1     187   267 ..     1    86 []   169.2  9.9e-48
PF01753.9.fs   1/1     498   534 ..     1    43 []    69.6    9e-22
PF01753.9.ls   1/1     498   534 ..     1    43 []    71.5  2.5e-18

Alignments of top-scoring domains:
PF01342.11.fs: domain 1 of 1, from 187 to 267: score 167.2, E = 3.4e-48
                   *->eenvdfkaselPqvTCGevkGiLykkkFksPGisvkCIqyedGkwlT
                      ++++++++selP v+C++++G+Lyk++++s G++++CI++++ +w++
     bm06379   187    NWDPSVYDSELP-VRCRNISGTLYKNRLGS-GGRGRCIKQGE-NWYS 230  

                   PkeFEiegGkgrsKDWKrsIRcgRSGssLreLmengtld<-*
                   P+eFE+++G+++sKDWKrsIR++  G++L++L+++g+l+   
     bm06379   231 PTEFEAMAGRASSKDWKRSIRYA--GRPLQCLIQDGILN    267  

PF01342.11.ls: domain 1 of 1, from 187 to 267: score 169.2, E = 9.9e-48
                   *->eenvdfkaselPqvTCGevkGiLykkkFksPGisvkCIqyedGkwlT
                      ++++++++selP v+C++++G+Lyk++++s G++++CI++++ +w++
     bm06379   187    NWDPSVYDSELP-VRCRNISGTLYKNRLGS-GGRGRCIKQGE-NWYS 230  

                   PkeFEiegGkgrsKDWKrsIRcgRSGssLreLmengtld<-*
                   P+eFE+++G+++sKDWKrsIR++  G++L++L+++g+l+   
     bm06379   231 PTEFEAMAGRASSKDWKRSIRYA--GRPLQCLIQDGILN    267  

PF01753.9.fs: domain 1 of 1, from 498 to 534: score 69.6, E = 9e-22
                   *->CanCgreatksrqLkkCsrCknarYCSkeCQrkdWllgHkreC<-*
                      C nCgrea++     +C++C++++YCS +CQrkdW+ +H+++C   
     bm06379   498    CVNCGREAMS-----ECTGCHKVNYCSTFCQRKDWK-DHQHIC    534  

PF01753.9.ls: domain 1 of 1, from 498 to 534: score 71.5, E = 2.5e-18
                   *->CanCgreatksrqLkkCsrCknarYCSkeCQrkdWllgHkreC<-*
                      C nCgrea++     +C++C++++YCS +CQrkdW+ +H+++C   
     bm06379   498    CVNCGREAMS-----ECTGCHKVNYCSTFCQRKDWK-DHQHIC    534  

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