hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20090416/iprscan-20090416-12164764/chunk_1/iprscan-20090416-12164764.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bm06513 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00765 170.4 1.7e-46 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00765 1/1 35 128 .. 1 116 [] 170.4 1.7e-46 Alignments of top-scoring domains: SM00765: domain 1 of 1, from 35 to 128: score 170.4, E = 1.7e-46 *->spgedClgrGaffrvlenagiirteeSisaGarfLksPvavntwedE s+ ++Cl++ le++ +i+++ S+s+G+r+ ++P++++t+ed bm06513 35 SASQNCLKK-----SLEDV-VIDIQSSLSKGIRG-NEPIYTSTQED- 73 AYLWNCvraCCstpnisGdkaCnlavfeedlrredaegnCYLfnCtypgk C+++CCst+nisGdkaCnl++f+ +r++++++nCYLf+C p++ bm06513 74 -----CINSCCSTKNISGDKACNLMIFD--TRKTARQPNCYLFFC--PNE 114 evClPkfkVRmpkegytsy<-* e+C ++k p++g++sy bm06513 115 EAC--PLK---PAKGLMSY 128 //