# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Obm06678.fasta.nr -Q bm06678.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 bm06678, 353 aa vs /cdna2/lib/nr/nr library 3071326396 residues in 8985982 sequences statistics sampled from 60000 to 8984981 sequences Expectation_n fit: rho(ln(x))= 5.3475+/-0.000189; mu= 9.0323+/- 0.011 mean_var=76.1977+/-14.840, 0's: 40 Z-trim: 40 B-trim: 1002 in 1/65 Lambda= 0.146928 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(8985982) gi|208966666|dbj|BAG73347.1| LIM domain binding 2 ( 345) 2363 510.1 3.1e-142 gi|114593282|ref|XP_001161684.1| PREDICTED: LIM do ( 344) 2335 504.1 1.9e-140 gi|149410654|ref|XP_001505760.1| PREDICTED: simila ( 329) 1249 273.9 3.6e-71 gi|126331872|ref|XP_001363230.1| PREDICTED: simila ( 329) 1249 273.9 3.6e-71 gi|224050077|ref|XP_002193978.1| PREDICTED: LIM do ( 371) 1249 274.0 4e-71 gi|126331870|ref|XP_001363147.1| PREDICTED: simila ( 373) 1249 274.0 4e-71 gi|149410652|ref|XP_001505683.1| PREDICTED: simila ( 373) 1249 274.0 4e-71 gi|3372813|gb|AAC28343.1| LIM homeobox protein cof ( 331) 1245 273.1 6.5e-71 gi|119613172|gb|EAW92766.1| LIM domain binding 2, ( 371) 1245 273.1 7.2e-71 gi|68565371|sp|O43679.1|LDB2_HUMAN RecName: Full=L ( 373) 1245 273.1 7.2e-71 gi|74147160|dbj|BAE27488.1| unnamed protein produc ( 329) 1240 272.0 1.4e-70 gi|2738118|gb|AAB96886.1| LIM homeobox protein cof ( 331) 1240 272.0 1.4e-70 gi|197246018|gb|AAI68881.1| Ldb2 protein [Rattus n ( 371) 1240 272.1 1.5e-70 gi|158515399|sp|O55203.2|LDB2_MOUSE RecName: Full= ( 373) 1240 272.1 1.5e-70 gi|149047267|gb|EDL99936.1| LIM domain binding 2 ( ( 373) 1240 272.1 1.5e-70 gi|2738114|gb|AAB96884.1| LIM homeobox protein cof ( 373) 1240 272.1 1.5e-70 gi|149702871|ref|XP_001500409.1| PREDICTED: LIM do ( 373) 1240 272.1 1.5e-70 gi|86820695|gb|AAI05322.1| LIM domain binding 2 [B ( 324) 1239 271.8 1.6e-70 gi|164420735|ref|NP_001040076.2| LIM domain bindin ( 370) 1239 271.8 1.7e-70 gi|108743262|dbj|BAE95407.1| LIM-domain-binding pr ( 373) 1237 271.4 2.3e-70 gi|123886630|sp|Q1EQW7.1|LDB2_XENLA RecName: Full= ( 398) 1237 271.4 2.5e-70 gi|114593280|ref|XP_001161726.1| PREDICTED: LIM do ( 373) 1234 270.8 3.6e-70 gi|108743256|dbj|BAE95404.1| LIM-domain-binding pr ( 330) 1233 270.5 3.8e-70 gi|82177713|sp|Q9W676.1|LDB2_CHICK RecName: Full=L ( 371) 1231 270.1 5.6e-70 gi|49900559|gb|AAH76070.1| Ldb2a protein [Danio re ( 267) 1196 262.6 7.4e-68 gi|3078001|gb|AAC15796.1| LIM-domain binding facto ( 385) 1196 262.7 9.9e-68 gi|73951815|ref|XP_536231.2| PREDICTED: similar to ( 322) 1067 235.3 1.5e-59 gi|3044066|gb|AAC13274.1| LIM domain binding prote ( 347) 1060 233.9 4.3e-59 gi|149702874|ref|XP_001500416.1| PREDICTED: LIM do ( 347) 1055 232.8 9e-59 gi|215505066|gb|EEC14560.1| Lim domain-binding pro ( 405) 1033 228.2 2.6e-57 gi|212512604|gb|EEB15347.1| LIM domain-binding pro ( 382) 993 219.7 8.8e-55 gi|221043078|dbj|BAH13216.1| unnamed protein produ ( 337) 991 219.2 1.1e-54 gi|3078003|gb|AAC15797.1| LIM-domain binding facto ( 384) 989 218.9 1.6e-54 gi|91077994|ref|XP_969024.1| PREDICTED: similar to ( 575) 986 218.4 3.4e-54 gi|110758526|ref|XP_394712.3| PREDICTED: similar t ( 776) 985 218.2 5e-54 gi|156540736|ref|XP_001599552.1| PREDICTED: simila ( 797) 984 218.0 5.9e-54 gi|72007777|ref|XP_782747.1| PREDICTED: similar to ( 384) 946 209.7 8.8e-52 gi|4959042|gb|AAD34208.1|AF069991_1 CLIM-2 [Gallus ( 373) 936 207.6 3.7e-51 gi|122891685|dbj|BAE95405.2| LIM-domain-binding pr ( 304) 934 207.1 4.3e-51 gi|82185665|sp|Q6NVL6.1|LDB1_XENTR RecName: Full=L ( 373) 934 207.2 5e-51 gi|1707005|gb|AAC60054.1| LIM domain binding prote ( 375) 934 207.2 5e-51 gi|2582524|gb|AAB82582.1| neural src interacting p ( 375) 934 207.2 5e-51 gi|158518421|sp|P70060.2|LDB1_XENLA RecName: Full= ( 375) 934 207.2 5e-51 gi|82069404|sp|O42252.1|LDB1_CHICK RecName: Full=L ( 411) 934 207.2 5.4e-51 gi|108743254|dbj|BAE95403.1| LIM-domain-binding pr ( 323) 930 206.3 8.1e-51 gi|62205315|gb|AAH93137.1| Ldb1b protein [Danio re ( 286) 926 205.4 1.3e-50 gi|50417042|gb|AAH78225.1| Ldb1b protein [Danio re ( 290) 926 205.4 1.3e-50 gi|3077999|gb|AAC15795.1| LIM-domain binding facto ( 374) 926 205.5 1.6e-50 gi|54038373|gb|AAH84686.1| Ldb1a protein [Danio re ( 352) 925 205.3 1.8e-50 gi|149412234|ref|XP_001511124.1| PREDICTED: simila ( 435) 921 204.5 3.8e-50 >>gi|208966666|dbj|BAG73347.1| LIM domain binding 2 [syn (345 aa) initn: 2363 init1: 2363 opt: 2363 Z-score: 2710.9 bits: 510.1 E(): 3.1e-142 Smith-Waterman score: 2363; 100.000% identity (100.000% similar) in 345 aa overlap (9-353:1-345) 10 20 30 40 50 60 bm0667 LDFRKAGKMSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWD :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|208 MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWD 10 20 30 40 50 70 80 90 100 110 120 bm0667 AFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|208 AFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYH 60 70 80 90 100 110 130 140 150 160 170 180 bm0667 NSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|208 NSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRS 120 130 140 150 160 170 190 200 210 220 230 240 bm0667 ILAMHLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAEPTRQPTTKRRKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|208 ILAMHLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAEPTRQPTTKRRKR 180 190 200 210 220 230 250 260 270 280 290 300 bm0667 KNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPDVMVVGEPTLMGGEFGDEDERLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|208 KNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPDVMVVGEPTLMGGEFGDEDERLI 240 250 260 270 280 290 310 320 330 340 350 bm0667 TRLENTQYDAANGMDDEEDFNNSPALGNNSPWNSKPPATQETKSENPPPQASQ ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|208 TRLENTQYDAANGMDDEEDFNNSPALGNNSPWNSKPPATQETKSENPPPQASQ 300 310 320 330 340 >>gi|114593282|ref|XP_001161684.1| PREDICTED: LIM domain (344 aa) initn: 1589 init1: 1589 opt: 2335 Z-score: 2678.8 bits: 504.1 E(): 1.9e-140 Smith-Waterman score: 2335; 99.420% identity (99.420% similar) in 345 aa overlap (9-353:1-344) 10 20 30 40 50 60 bm0667 LDFRKAGKMSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWD ::::: :::::::::::::::::::::::::::::::::::::::::::::: gi|114 MSSTPDDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWD 10 20 30 40 50 70 80 90 100 110 120 bm0667 AFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 AFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYH 60 70 80 90 100 110 130 140 150 160 170 180 bm0667 NSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 NSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRS 120 130 140 150 160 170 190 200 210 220 230 240 bm0667 ILAMHLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAEPTRQPTTKRRKR :::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::: gi|114 ILAMHLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPP-EPTRQPTTKRRKR 180 190 200 210 220 230 250 260 270 280 290 300 bm0667 KNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPDVMVVGEPTLMGGEFGDEDERLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 KNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPDVMVVGEPTLMGGEFGDEDERLI 240 250 260 270 280 290 310 320 330 340 350 bm0667 TRLENTQYDAANGMDDEEDFNNSPALGNNSPWNSKPPATQETKSENPPPQASQ ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 TRLENTQYDAANGMDDEEDFNNSPALGNNSPWNSKPPATQETKSENPPPQASQ 300 310 320 330 340 >>gi|149410654|ref|XP_001505760.1| PREDICTED: similar to (329 aa) initn: 1297 init1: 1235 opt: 1249 Z-score: 1435.0 bits: 273.9 E(): 3.6e-71 Smith-Waterman score: 1742; 89.492% identity (90.169% similar) in 295 aa overlap (9-275:1-295) 10 20 30 40 50 60 bm0667 LDFRKAGKMSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWD :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWD 10 20 30 40 50 70 80 90 100 110 120 bm0667 AFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 AFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYH 60 70 80 90 100 110 130 140 150 160 170 180 bm0667 NSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 NSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRS 120 130 140 150 160 170 190 200 210 bm0667 ILAMH----------------------------LCVILEPMQELMSRHKTYNLSPRDCLK ::::: ::::::::::::::::::::::::::: gi|149 ILAMHAQDPQVLEQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLK 180 190 200 210 220 230 220 230 240 250 260 270 bm0667 TCLFQKWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSL :::::::::::::::::::::::::::::::::::::::::::::::.::::: :::::: gi|149 TCLFQKWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTSSKKKTPAANLSL 240 250 260 270 280 290 280 290 300 310 320 330 bm0667 SSQVPDVMVVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPW .:: gi|149 TSQELGALQSCSLNPGRDGALCHSTTVTPSGQFKEKH 300 310 320 >>gi|126331872|ref|XP_001363230.1| PREDICTED: similar to (329 aa) initn: 1297 init1: 1235 opt: 1249 Z-score: 1435.0 bits: 273.9 E(): 3.6e-71 Smith-Waterman score: 1745; 89.831% identity (90.169% similar) in 295 aa overlap (9-275:1-295) 10 20 30 40 50 60 bm0667 LDFRKAGKMSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWD :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWD 10 20 30 40 50 70 80 90 100 110 120 bm0667 AFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 AFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYH 60 70 80 90 100 110 130 140 150 160 170 180 bm0667 NSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 NSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRS 120 130 140 150 160 170 190 200 210 bm0667 ILAMH----------------------------LCVILEPMQELMSRHKTYNLSPRDCLK ::::: ::::::::::::::::::::::::::: gi|126 ILAMHAQDPQVLEQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLK 180 190 200 210 220 230 220 230 240 250 260 270 bm0667 TCLFQKWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSL :::::::::::::::::::::::::::::::::::::::::::::::.::::: :::::: gi|126 TCLFQKWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTSSKKKTPAANLSL 240 250 260 270 280 290 280 290 300 310 320 330 bm0667 SSQVPDVMVVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPW ::: gi|126 SSQELGALQSCSLNPGRDGALCHSTAVTPSVQFKEKH 300 310 320 >>gi|224050077|ref|XP_002193978.1| PREDICTED: LIM domain (371 aa) initn: 1776 init1: 1235 opt: 1249 Z-score: 1434.3 bits: 274.0 E(): 4e-71 Smith-Waterman score: 2225; 90.349% identity (91.421% similar) in 373 aa overlap (9-353:1-371) 10 20 30 40 50 60 bm0667 LDFRKAGKMSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWD :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|224 MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWD 10 20 30 40 50 70 80 90 100 110 120 bm0667 AFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|224 AFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYH 60 70 80 90 100 110 130 140 150 160 170 180 bm0667 NSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|224 NSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRS 120 130 140 150 160 170 190 200 210 bm0667 ILAMH----------------------------LCVILEPMQELMSRHKTYNLSPRDCLK ::::: ::::::::::::::::::::::::::: gi|224 ILAMHAQDPQVLEQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLK 180 190 200 210 220 230 220 230 240 250 260 270 bm0667 TCLFQKWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSL :::::::::::::::::::::::::::::::::::::::::::::::.::::..:::::: gi|224 TCLFQKWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTNSKKKSAAANLSL 240 250 260 270 280 290 280 290 300 310 320 330 bm0667 SSQVPDVMVVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPW ::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|224 SSQ--DVMVVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPW 300 310 320 330 340 350 340 350 bm0667 NSKPPATQETKSENPPPQASQ :::: :.:::::::: ::::: gi|224 NSKPAANQETKSENPTPQASQ 360 370 >>gi|126331870|ref|XP_001363147.1| PREDICTED: similar to (373 aa) initn: 1260 init1: 1235 opt: 1249 Z-score: 1434.2 bits: 274.0 E(): 4e-71 Smith-Waterman score: 2261; 91.153% identity (91.957% similar) in 373 aa overlap (9-353:1-373) 10 20 30 40 50 60 bm0667 LDFRKAGKMSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWD :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWD 10 20 30 40 50 70 80 90 100 110 120 bm0667 AFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 AFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYH 60 70 80 90 100 110 130 140 150 160 170 180 bm0667 NSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 NSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRS 120 130 140 150 160 170 190 200 210 bm0667 ILAMH----------------------------LCVILEPMQELMSRHKTYNLSPRDCLK ::::: ::::::::::::::::::::::::::: gi|126 ILAMHAQDPQVLEQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLK 180 190 200 210 220 230 220 230 240 250 260 270 bm0667 TCLFQKWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSL :::::::::::::::::::::::::::::::::::::::::::::::.::::: :::::: gi|126 TCLFQKWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTSSKKKTPAANLSL 240 250 260 270 280 290 280 290 300 310 320 330 bm0667 SSQVPDVMVVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 SSQVPDVMVVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPW 300 310 320 330 340 350 340 350 bm0667 NSKPPATQETKSENPPPQASQ .:::::.:::::::: ::::: gi|126 SSKPPANQETKSENPTPQASQ 360 370 >>gi|149410652|ref|XP_001505683.1| PREDICTED: similar to (373 aa) initn: 1260 init1: 1235 opt: 1249 Z-score: 1434.2 bits: 274.0 E(): 4e-71 Smith-Waterman score: 2254; 90.617% identity (91.957% similar) in 373 aa overlap (9-353:1-373) 10 20 30 40 50 60 bm0667 LDFRKAGKMSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWD :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWD 10 20 30 40 50 70 80 90 100 110 120 bm0667 AFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 AFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYH 60 70 80 90 100 110 130 140 150 160 170 180 bm0667 NSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 NSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRS 120 130 140 150 160 170 190 200 210 bm0667 ILAMH----------------------------LCVILEPMQELMSRHKTYNLSPRDCLK ::::: ::::::::::::::::::::::::::: gi|149 ILAMHAQDPQVLEQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLK 180 190 200 210 220 230 220 230 240 250 260 270 bm0667 TCLFQKWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSL :::::::::::::::::::::::::::::::::::::::::::::::.::::: :::::: gi|149 TCLFQKWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTSSKKKTPAANLSL 240 250 260 270 280 290 280 290 300 310 320 330 bm0667 SSQVPDVMVVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPW .::::::::::::::::::::::::::::::::::::::::.:.:::::::::::::::: gi|149 TSQVPDVMVVGEPTLMGGEFGDEDERLITRLENTQYDAANGLDEEEDFNNSPALGNNSPW 300 310 320 330 340 350 340 350 bm0667 NSKPPATQETKSENPPPQASQ ::::::.:::::::: ::::: gi|149 NSKPPANQETKSENPTPQASQ 360 370 >>gi|3372813|gb|AAC28343.1| LIM homeobox protein cofacto (331 aa) initn: 1307 init1: 1235 opt: 1245 Z-score: 1430.4 bits: 273.1 E(): 6.5e-71 Smith-Waterman score: 1791; 86.943% identity (88.854% similar) in 314 aa overlap (9-294:1-314) 10 20 30 40 50 60 bm0667 LDFRKAGKMSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWD :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|337 MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWD 10 20 30 40 50 70 80 90 100 110 120 bm0667 AFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|337 AFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYH 60 70 80 90 100 110 130 140 150 160 170 180 bm0667 NSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|337 NSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRS 120 130 140 150 160 170 190 200 210 bm0667 ILAMH----------------------------LCVILEPMQELMSRHKTYNLSPRDCLK ::::: ::::::::::::::::::::::::::: gi|337 ILAMHAQDPQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLK 180 190 200 210 220 230 220 230 240 250 260 270 bm0667 TCLFQKWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|337 TCLFQKWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSL 240 250 260 270 280 290 280 290 300 310 320 330 bm0667 SSQVPDVMVVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPW ::::: . .. . .: :. :: gi|337 SSQVPGLGAIPNCSLNPGRDGDLCHSTAVTPSGQFKEKH 300 310 320 330 >>gi|119613172|gb|EAW92766.1| LIM domain binding 2, isof (371 aa) initn: 1749 init1: 1235 opt: 1245 Z-score: 1429.7 bits: 273.1 E(): 7.2e-71 Smith-Waterman score: 2268; 91.957% identity (91.957% similar) in 373 aa overlap (9-353:1-371) 10 20 30 40 50 60 bm0667 LDFRKAGKMSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWD :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWD 10 20 30 40 50 70 80 90 100 110 120 bm0667 AFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 AFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYH 60 70 80 90 100 110 130 140 150 160 170 180 bm0667 NSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 NSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRS 120 130 140 150 160 170 190 200 210 bm0667 ILAMH----------------------------LCVILEPMQELMSRHKTYNLSPRDCLK ::::: ::::::::::::::::::::::::::: gi|119 ILAMHAQDPQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLK 180 190 200 210 220 230 220 230 240 250 260 270 bm0667 TCLFQKWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 TCLFQKWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSL 240 250 260 270 280 290 280 290 300 310 320 330 bm0667 SSQVPDVMVVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPW ::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SSQ--DVMVVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPW 300 310 320 330 340 350 340 350 bm0667 NSKPPATQETKSENPPPQASQ ::::::::::::::::::::: gi|119 NSKPPATQETKSENPPPQASQ 360 370 >>gi|68565371|sp|O43679.1|LDB2_HUMAN RecName: Full=LIM d (373 aa) initn: 1235 init1: 1235 opt: 1245 Z-score: 1429.6 bits: 273.1 E(): 7.2e-71 Smith-Waterman score: 2297; 92.493% identity (92.493% similar) in 373 aa overlap (9-353:1-373) 10 20 30 40 50 60 bm0667 LDFRKAGKMSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWD :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|685 MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWD 10 20 30 40 50 70 80 90 100 110 120 bm0667 AFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|685 AFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYH 60 70 80 90 100 110 130 140 150 160 170 180 bm0667 NSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|685 NSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRS 120 130 140 150 160 170 190 200 210 bm0667 ILAMH----------------------------LCVILEPMQELMSRHKTYNLSPRDCLK ::::: ::::::::::::::::::::::::::: gi|685 ILAMHAQDPQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLK 180 190 200 210 220 230 220 230 240 250 260 270 bm0667 TCLFQKWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|685 TCLFQKWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSL 240 250 260 270 280 290 280 290 300 310 320 330 bm0667 SSQVPDVMVVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|685 SSQVPDVMVVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPW 300 310 320 330 340 350 340 350 bm0667 NSKPPATQETKSENPPPQASQ ::::::::::::::::::::: gi|685 NSKPPATQETKSENPPPQASQ 360 370 353 residues in 1 query sequences 3071326396 residues in 8985982 library sequences Tcomplib [34.26] (8 proc) start: Thu Jun 18 01:44:35 2009 done: Thu Jun 18 01:47:56 2009 Total Scan time: 1003.680 Total Display time: 0.080 Function used was FASTA [version 34.26.5 April 26, 2007]