hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-01475763/chunk_1/iprscan-20090618-01475763.nocrc
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Query sequence: bm06678
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01803.7.fs LIM-domain binding protein                     905.0   3.1e-269   2
PF01803.7.ls LIM-domain binding protein                     904.8   3.4e-269   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01803.7.fs   1/2       9   185 ..     1   194 [.   485.5   6e-143
PF01803.7.ls   1/1       9   353 .]     1   435 []   904.8 3.4e-269
PF01803.7.fs   2/2     186   353 .]   224   435 .]   419.5 4.2e-123

Alignments of top-scoring domains:
PF01803.7.fs: domain 1 of 2, from 9 to 185: score 485.5, E = 6e-143
                   *->magalgkPgyssqatefgPiyrrhsPYfvqtEyRihelNKRLqiFss
                      m++++++P+yss+   fgP+yrrh+PY+vq+EyRi+e+NKRLq    
     bm06678     9    MSSTPHDPFYSSP---FGPFYRRHTPYMVQPEYRIYEMNKRLQ---- 48   

                   tsrsEesdnlWWDAFttEFFeDDAkLtlvfClEdvaFaGPkRYtIGRtLI
                    sr+E+sdnlWWDAF+tEFFeDDA+Ltl+fClEd    GPkRYtIGRtLI
     bm06678    49 -SRTEDSDNLWWDAFATEFFEDDATLTLSFCLED----GPKRYTIGRTLI 93   

                   PryFrSiFeGGvteLyYvLKhpkeeCsfhNssitlDcdqctmiTqhGkps
                   PryF+++FeGGvt+LyY+LKh+ke  s+hNssit+Dcdqctm+TqhGkp+
     bm06678    94 PRYFSTVFEGGVTDLYYILKHSKE--SYHNSSITVDCDQCTMVTQHGKPM 141  

                   ftkVCtEGrLiLEFtPFDDlMnYRIKtWhltikryrELiPrsvlAmh<-*
                   ftkVCtEGrLiLEFt FDDlM  RIKtWh+ti++yrEL+Prs+lAmh   
     bm06678   142 FTKVCTEGRLILEFT-FDDLM--RIKTWHFTIRQYRELVPRSILAMH    185  

PF01803.7.ls: domain 1 of 1, from 9 to 353: score 904.8, E = 3.4e-269
                   *->magalgkPgyssqatefgPiyrrhsPYfvqtEyRihelNKRLqiFss
                      m++++++P+yss+   fgP+yrrh+PY+vq+EyRi+e+NKRLq    
     bm06678     9    MSSTPHDPFYSSP---FGPFYRRHTPYMVQPEYRIYEMNKRLQ---- 48   

                   tsrsEesdnlWWDAFttEFFeDDAkLtlvfClEdvaFaGPkRYtIGRtLI
                    sr+E+sdnlWWDAF+tEFFeDDA+Ltl+fClEd    GPkRYtIGRtLI
     bm06678    49 -SRTEDSDNLWWDAFATEFFEDDATLTLSFCLED----GPKRYTIGRTLI 93   

                   PryFrSiFeGGvteLyYvLKhpkeeCsfhNssitlDcdqctmiTqhGkps
                   PryF+++FeGGvt+LyY+LKh+ke  s+hNssit+Dcdqctm+TqhGkp+
     bm06678    94 PRYFSTVFEGGVTDLYYILKHSKE--SYHNSSITVDCDQCTMVTQHGKPM 141  

                   ftkVCtEGrLiLEFtPFDDlMnYRIKtWhltikryrELiPrsvlAmhlaq
                   ftkVCtEGrLiLEFt FDDlM  RIKtWh+ti++yrEL+Prs+lAmh   
     bm06678   142 FTKVCTEGRLILEFT-FDDLM--RIKTWHFTIRQYRELVPRSILAMH--- 185  

                   DPqlldQLskNitRmGltnsTLNYLrLcvILePMQeLMSrhKtyPaLSPR
                                             LcvILePMQeLMSrhKty +LSPR
     bm06678   186 --------------------------LCVILEPMQELMSRHKTY-NLSPR 208  

                   DcLKttLFQkWQvRqqnmRqqqLnqrMvaPPaePekqrpPaKrRkRKnSa
                   DcLKt+LFQkWQ             rMvaPPaeP++q p++KrRkRKnS+
     bm06678   209 DCLKTCLFQKWQ-------------RMVAPPAEPTRQ-PTTKRRKRKNST 244  

                   nPRGsksstsnssagntaastGvPPtvPtasPaNskkkppapnfSlsqqs
                         sstsnssagn+a+st            +skkk++a+n+Sls  s
     bm06678   245 ------SSTSNSSAGNNANST------------GSKKKTTAANLSLS--S 274  

                   qvPDVMVVGEPtLMGGEFGeeDERlITRLENtQYDpaNamdddslgdfnn
                   qvPDVMVVGEPtLMGGEFG+eDERlITRLENtQYD+aN+mdd+  +dfn 
     bm06678   275 QVPDVMVVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDDE--EDFN- 321  

                   ssmninnspalGnnsPWnskpPgqqeskpenmasQqsq<-*
                         nspalGnnsPWnskpP++qe+k+en+++Q+sq   
     bm06678   322 ------NSPALGNNSPWNSKPPATQETKSENPPPQASQ    353  

PF01803.7.fs: domain 2 of 2, from 186 to 353: score 419.5, E = 4.2e-123
                   *->LcvILePMQeLMSrhKtyPaLSPRDcLKttLFQkWQvRqqnmRqqqL
                      LcvILePMQeLMSrhKty +LSPRDcLKt+LFQkWQ           
     bm06678   186    LCVILEPMQELMSRHKTY-NLSPRDCLKTCLFQKWQ----------- 220  

                   nqrMvaPPaePekqrpPaKrRkRKnSanPRGsksstsnssagntaastGv
                     rMvaPPaeP++q p++KrRkRKnS+      sstsnssagn+a+st  
     bm06678   221 --RMVAPPAEPTRQ-PTTKRRKRKNST------SSTSNSSAGNNANST-- 259  

                   PPtvPtasPaNskkkppapnfSlsqqsqvPDVMVVGEPtLMGGEFGeeDE
                             +skkk++a+n+Sls  sqvPDVMVVGEPtLMGGEFG+eDE
     bm06678   260 ----------GSKKKTTAANLSLS--SQVPDVMVVGEPTLMGGEFGDEDE 297  

                   RlITRLENtQYDpaNamdddslgdfnnssmninnspalGnnsPWnskpPg
                   RlITRLENtQYD+aN+mdd+  +dfn       nspalGnnsPWnskpP+
     bm06678   298 RLITRLENTQYDAANGMDDE--EDFN-------NSPALGNNSPWNSKPPA 338  

                   qqeskpenmasQqsq<-*
                   +qe+k+en+++Q+sq   
     bm06678   339 TQETKSENPPPQASQ    353  

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