hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090416/iprscan-20090416-12221246/chunk_1/iprscan-20090416-12221246.nocrc
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Query sequence: bm06932
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00028                                                  28.1     0.0012   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00028    1/4     305   338 ..     1    34 []    12.3       20
SM00028    2/4     471   504 ..     1    34 []     9.3       44
SM00028    3/4     545   578 ..     1    34 []     3.3  2.2e+02
SM00028    4/4     585   618 ..     1    34 []     3.2  2.2e+02

Alignments of top-scoring domains:
SM00028: domain 1 of 4, from 305 to 338: score 12.3, E = 20
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                        a +nl+ ++ + g y++A+ ++++A++++ +    
     bm06932   305    RYAALNLAALHCRFGHYQQAELALQEAIRIAQES    338  

SM00028: domain 2 of 4, from 471 to 504: score 9.3, E = 44
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a al+ l++++  +g ++ A e ++   e  P n   
     bm06932   471    AVALCHLAELHAEQGCFAAASEVLKHLKERFPPN    504  

SM00028: domain 3 of 4, from 545 to 578: score 3.3, E = 2.2e+02
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      +e  y++++++ ++++  eA + ++k L +  +    
     bm06932   545    IEGVYRKAVVLQAQNQMSEAHKLLQKLLVHCQKL    578  

SM00028: domain 4 of 4, from 585 to 618: score 3.2, E = 2.2e+02
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      + +l+  +++y +      A+  + +AL+l  ++   
     bm06932   585    ISVLLSVAELYWRSSSPTIALPMLLQALALSKEY    618  

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