# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Obm07084.fasta.nr -Q bm07084.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 bm07084, 443 aa vs /cdna2/lib/nr/nr library 3071326396 residues in 8985982 sequences statistics sampled from 60000 to 8964977 sequences Expectation_n fit: rho(ln(x))= 5.8412+/-0.000201; mu= 8.9126+/- 0.011 mean_var=111.6036+/-21.190, 0's: 42 Z-trim: 105 B-trim: 189 in 1/66 Lambda= 0.121405 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(8985982) gi|73966852|ref|XP_852897.1| PREDICTED: similar to ( 464) 2955 528.2 1.8e-147 gi|60416412|sp|P48742.2|LHX1_HUMAN RecName: Full=L ( 406) 2863 512.0 1.2e-142 gi|60389888|sp|Q5IS44.1|LHX1_PANTR RecName: Full=L ( 406) 2858 511.2 2.2e-142 gi|157279406|gb|AAI53213.1| LHX1 protein [Bos taur ( 406) 2855 510.6 3.1e-142 gi|51702761|sp|P63007.1|LHX1_RAT RecName: Full=LIM ( 406) 2854 510.5 3.5e-142 gi|74187870|dbj|BAE24561.1| unnamed protein produc ( 406) 2838 507.7 2.4e-141 gi|55846812|gb|AAV67410.1| LIM homeobox protein 1 ( 403) 2836 507.3 3.1e-141 gi|549846|gb|AAA21644.1| LIM domain transcription ( 404) 2805 501.9 1.3e-139 gi|1708826|sp|P53411.1|LHX1_CHICK RecName: Full=LI ( 406) 2727 488.2 1.7e-135 gi|8248965|gb|AAC60669.2| lateral and intermediate ( 407) 2707 484.7 2e-134 gi|138519843|gb|AAI35732.1| Lhx1 protein [Xenopus ( 409) 2659 476.3 6.7e-132 gi|267419|sp|P29674.1|LHX1_XENLA RecName: Full=LIM ( 403) 2650 474.7 2e-131 gi|2497670|sp|Q90476.1|LHX1_DANRE RecName: Full=LI ( 405) 2555 458.1 2e-126 gi|47224946|emb|CAG06516.1| unnamed protein produc ( 408) 2526 453.0 6.9e-125 gi|46394864|gb|AAS91588.1| Lim1 [Oryctolagus cunic ( 348) 2404 431.6 1.7e-118 gi|194217236|ref|XP_001917922.1| PREDICTED: simila ( 353) 2387 428.6 1.3e-117 gi|2155289|gb|AAB58796.1| LIM class homeodomain pr ( 402) 2200 395.9 1.1e-107 gi|47606426|sp|P61376.1|LHX5_RAT RecName: Full=LIM ( 402) 2145 386.3 8.4e-105 gi|118098876|ref|XP_001234553.1| PREDICTED: simila ( 402) 2144 386.1 9.5e-105 gi|73995258|ref|XP_543409.2| PREDICTED: similar to ( 451) 2141 385.6 1.5e-104 gi|151557071|gb|AAI50044.1| LHX5 protein [Bos taur ( 402) 2138 385.0 2e-104 gi|114647136|ref|XP_001153819.1| PREDICTED: LIM ho ( 401) 2122 382.2 1.4e-103 gi|109098848|ref|XP_001111705.1| PREDICTED: simila ( 402) 2122 382.2 1.4e-103 gi|18202938|sp|Q9H2C1.1|LHX5_HUMAN RecName: Full=L ( 402) 2122 382.2 1.4e-103 gi|89269010|emb|CAJ81605.1| LIM homeobox 5 [Xenopu ( 402) 2117 381.4 2.5e-103 gi|1708831|sp|P37137.2|LHX5_XENLA RecName: Full=LI ( 402) 2108 379.8 7.5e-103 gi|52354701|gb|AAH82847.1| Unknown (protein for MG ( 402) 2092 377.0 5.2e-102 gi|194214279|ref|XP_001915147.1| PREDICTED: simila ( 402) 1998 360.5 4.7e-97 gi|1708830|sp|P52889.1|LHX5_DANRE RecName: Full=LI ( 399) 1964 354.6 2.9e-95 gi|47228451|emb|CAG05271.1| unnamed protein produc ( 579) 1860 336.5 1.2e-89 gi|62020648|gb|AAH20470.1| LHX1 protein [Homo sapi ( 260) 1802 326.0 7.5e-87 gi|26327877|dbj|BAC27679.1| unnamed protein produc ( 256) 1772 320.8 2.8e-85 gi|47219374|emb|CAG01537.1| unnamed protein produc ( 390) 1761 319.0 1.4e-84 gi|190361014|gb|ACE76893.1| Lim1 [Emys orbicularis ( 261) 1758 318.3 1.6e-84 gi|126324469|ref|XP_001378455.1| PREDICTED: simila ( 341) 1450 264.5 3.3e-68 gi|37789883|gb|AAP04274.1| ScLim1 [Scyliorhinus ca ( 237) 1363 249.1 9.8e-64 gi|158262567|gb|AAI54404.1| LHX1 protein [Bos taur ( 190) 1305 238.8 9.6e-61 gi|126307650|ref|XP_001371228.1| PREDICTED: hypoth ( 412) 1299 238.1 3.4e-60 gi|149551088|ref|XP_001517055.1| PREDICTED: simila ( 231) 1208 221.9 1.4e-55 gi|19223821|dbj|BAB85837.1| LIM-homeodomain protei ( 173) 1086 200.4 3.2e-49 gi|190581566|gb|EDV21642.1| hypothetical protein T ( 292) 1001 185.8 1.4e-44 gi|194390004|dbj|BAG60518.1| unnamed protein produ ( 301) 986 183.2 8.8e-44 gi|209489466|gb|ACI49225.1| hypothetical protein C ( 344) 979 182.0 2.3e-43 gi|829167|emb|CAA38240.1| lin-11 protein [Caenorha ( 382) 972 180.8 5.7e-43 gi|2506818|sp|P20154.2|LIN11_CAEEL RecName: Full=P ( 405) 972 180.8 5.9e-43 gi|187029651|emb|CAP31196.1| C. briggsae CBR-LIN-1 ( 411) 943 175.8 2e-41 gi|10257388|dbj|BAB13725.1| transcription factor H ( 480) 829 155.9 2.3e-35 gi|33286229|gb|AAQ01662.1| Lim homeodomain transcr ( 480) 824 155.0 4.3e-35 gi|167859076|gb|ACA04473.1| Lim1 [Strongylocentrot ( 480) 823 154.8 4.8e-35 gi|2384698|gb|AAB70190.1| homeobox protein Lim-1 [ ( 112) 812 152.3 6.5e-35 >>gi|73966852|ref|XP_852897.1| PREDICTED: similar to LIM (464 aa) initn: 2956 init1: 2916 opt: 2955 Z-score: 2804.8 bits: 528.2 E(): 1.8e-147 Smith-Waterman score: 2955; 97.912% identity (98.608% similar) in 431 aa overlap (13-443:35-464) 10 20 30 40 bm0708 PLFGETGELVPIVFRSHPLGSTLPLSLSGPHQTKPKTMVHCA :: .:::::: ::: :: :.:::::::: gi|739 LQRDREPLIGFGLHPQCVSSFWRGWGALADVFGNHPLGSTCS-SLSRPHPTEPKTMVHCA 10 20 30 40 50 60 50 60 70 80 90 100 bm0708 GCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTKCAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 GCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTKCAG 70 80 90 100 110 120 110 120 130 140 150 160 bm0708 CAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLSNSSVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 CAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLSNSSVA 130 140 150 160 170 180 170 180 190 200 210 220 bm0708 KENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEAGSNENDDQNLGAKRRGPRT ::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::: gi|739 KENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEGGSNENDDQNLGAKRRGPRT 190 200 210 220 230 240 230 240 250 260 270 280 bm0708 TIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSALG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 TIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSALG 250 260 270 280 290 300 290 300 310 320 330 340 bm0708 ARRHAFFRSPRRMRPLVDRLEPGELIPNGPFSFYGDYQSEYYGPGGNYDFFPQGPPSSQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 ARRHAFFRSPRRMRPLVDRLEPGELIPNGPFSFYGDYQSEYYGPGGNYDFFPQGPPSSQA 310 320 330 340 350 360 350 360 370 380 390 400 bm0708 QTPVDLPFVPSSGPSGTPLGGLEHPLPGHHPSSEAQRFTDILAHPPGDSPSPEPSLPGPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 QTPVDLPFVPSSGPSGTPLGGLEHPLPGHHPSSEAQRFTDILAHPPGDSPSPEPSLPGPL 370 380 390 400 410 420 410 420 430 440 bm0708 HSMSAEVFGPSPPFSSLSVNGGASYGNHLSHPPEMNEAAVW ::::::::::::::::::::::::::::::::::::::::: gi|739 HSMSAEVFGPSPPFSSLSVNGGASYGNHLSHPPEMNEAAVW 430 440 450 460 >>gi|60416412|sp|P48742.2|LHX1_HUMAN RecName: Full=LIM/h (406 aa) initn: 2863 init1: 2863 opt: 2863 Z-score: 2718.4 bits: 512.0 E(): 1.2e-142 Smith-Waterman score: 2863; 100.000% identity (100.000% similar) in 406 aa overlap (38-443:1-406) 10 20 30 40 50 60 bm0708 ELVPIVFRSHPLGSTLPLSLSGPHQTKPKTMVHCAGCKRPILDRFLLNVLDRAWHVKCVQ :::::::::::::::::::::::::::::: gi|604 MVHCAGCKRPILDRFLLNVLDRAWHVKCVQ 10 20 30 70 80 90 100 110 120 bm0708 CCECKCNLTEKCFSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|604 CCECKCNLTEKCFSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFT 40 50 60 70 80 90 130 140 150 160 170 180 bm0708 CMMCNKQLSTGEELYIIDENKFVCKEDYLSNSSVAKENSLHSATTGSDPSLSPDSQDPSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|604 CMMCNKQLSTGEELYIIDENKFVCKEDYLSNSSVAKENSLHSATTGSDPSLSPDSQDPSQ 100 110 120 130 140 150 190 200 210 220 230 240 bm0708 DDAKDSESANVSDKEAGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|604 DDAKDSESANVSDKEAGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIR 160 170 180 190 200 210 250 260 270 280 290 300 bm0708 EQLAQETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPRRMRPLVDRLEPGEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|604 EQLAQETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPRRMRPLVDRLEPGEL 220 230 240 250 260 270 310 320 330 340 350 360 bm0708 IPNGPFSFYGDYQSEYYGPGGNYDFFPQGPPSSQAQTPVDLPFVPSSGPSGTPLGGLEHP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|604 IPNGPFSFYGDYQSEYYGPGGNYDFFPQGPPSSQAQTPVDLPFVPSSGPSGTPLGGLEHP 280 290 300 310 320 330 370 380 390 400 410 420 bm0708 LPGHHPSSEAQRFTDILAHPPGDSPSPEPSLPGPLHSMSAEVFGPSPPFSSLSVNGGASY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|604 LPGHHPSSEAQRFTDILAHPPGDSPSPEPSLPGPLHSMSAEVFGPSPPFSSLSVNGGASY 340 350 360 370 380 390 430 440 bm0708 GNHLSHPPEMNEAAVW :::::::::::::::: gi|604 GNHLSHPPEMNEAAVW 400 >>gi|60389888|sp|Q5IS44.1|LHX1_PANTR RecName: Full=LIM/h (406 aa) initn: 2858 init1: 2858 opt: 2858 Z-score: 2713.7 bits: 511.2 E(): 2.2e-142 Smith-Waterman score: 2858; 99.754% identity (100.000% similar) in 406 aa overlap (38-443:1-406) 10 20 30 40 50 60 bm0708 ELVPIVFRSHPLGSTLPLSLSGPHQTKPKTMVHCAGCKRPILDRFLLNVLDRAWHVKCVQ :::::::::::::::::::::::::::::: gi|603 MVHCAGCKRPILDRFLLNVLDRAWHVKCVQ 10 20 30 70 80 90 100 110 120 bm0708 CCECKCNLTEKCFSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|603 CCECKCNLTEKCFSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFT 40 50 60 70 80 90 130 140 150 160 170 180 bm0708 CMMCNKQLSTGEELYIIDENKFVCKEDYLSNSSVAKENSLHSATTGSDPSLSPDSQDPSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|603 CMMCNKQLSTGEELYIIDENKFVCKEDYLSNSSVAKENSLHSATTGSDPSLSPDSQDPSQ 100 110 120 130 140 150 190 200 210 220 230 240 bm0708 DDAKDSESANVSDKEAGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIR :::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::: gi|603 DDAKDSESANVSDKEGGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIR 160 170 180 190 200 210 250 260 270 280 290 300 bm0708 EQLAQETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPRRMRPLVDRLEPGEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|603 EQLAQETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPRRMRPLVDRLEPGEL 220 230 240 250 260 270 310 320 330 340 350 360 bm0708 IPNGPFSFYGDYQSEYYGPGGNYDFFPQGPPSSQAQTPVDLPFVPSSGPSGTPLGGLEHP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|603 IPNGPFSFYGDYQSEYYGPGGNYDFFPQGPPSSQAQTPVDLPFVPSSGPSGTPLGGLEHP 280 290 300 310 320 330 370 380 390 400 410 420 bm0708 LPGHHPSSEAQRFTDILAHPPGDSPSPEPSLPGPLHSMSAEVFGPSPPFSSLSVNGGASY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|603 LPGHHPSSEAQRFTDILAHPPGDSPSPEPSLPGPLHSMSAEVFGPSPPFSSLSVNGGASY 340 350 360 370 380 390 430 440 bm0708 GNHLSHPPEMNEAAVW :::::::::::::::: gi|603 GNHLSHPPEMNEAAVW 400 >>gi|157279406|gb|AAI53213.1| LHX1 protein [Bos taurus] (406 aa) initn: 2855 init1: 2855 opt: 2855 Z-score: 2710.9 bits: 510.6 E(): 3.1e-142 Smith-Waterman score: 2855; 99.507% identity (100.000% similar) in 406 aa overlap (38-443:1-406) 10 20 30 40 50 60 bm0708 ELVPIVFRSHPLGSTLPLSLSGPHQTKPKTMVHCAGCKRPILDRFLLNVLDRAWHVKCVQ :::::::::::::::::::::::::::::: gi|157 MVHCAGCKRPILDRFLLNVLDRAWHVKCVQ 10 20 30 70 80 90 100 110 120 bm0708 CCECKCNLTEKCFSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|157 CCECKCNLTEKCFSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFT 40 50 60 70 80 90 130 140 150 160 170 180 bm0708 CMMCNKQLSTGEELYIIDENKFVCKEDYLSNSSVAKENSLHSATTGSDPSLSPDSQDPSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|157 CMMCNKQLSTGEELYIIDENKFVCKEDYLSNSSVAKENSLHSATTGSDPSLSPDSQDPSQ 100 110 120 130 140 150 190 200 210 220 230 240 bm0708 DDAKDSESANVSDKEAGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIR :::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::: gi|157 DDAKDSESANVSDKEGGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIR 160 170 180 190 200 210 250 260 270 280 290 300 bm0708 EQLAQETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPRRMRPLVDRLEPGEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|157 EQLAQETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPRRMRPLVDRLEPGEL 220 230 240 250 260 270 310 320 330 340 350 360 bm0708 IPNGPFSFYGDYQSEYYGPGGNYDFFPQGPPSSQAQTPVDLPFVPSSGPSGTPLGGLEHP .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|157 LPNGPFSFYGDYQSEYYGPGGNYDFFPQGPPSSQAQTPVDLPFVPSSGPSGTPLGGLEHP 280 290 300 310 320 330 370 380 390 400 410 420 bm0708 LPGHHPSSEAQRFTDILAHPPGDSPSPEPSLPGPLHSMSAEVFGPSPPFSSLSVNGGASY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|157 LPGHHPSSEAQRFTDILAHPPGDSPSPEPSLPGPLHSMSAEVFGPSPPFSSLSVNGGASY 340 350 360 370 380 390 430 440 bm0708 GNHLSHPPEMNEAAVW :::::::::::::::: gi|157 GNHLSHPPEMNEAAVW 400 >>gi|51702761|sp|P63007.1|LHX1_RAT RecName: Full=LIM/hom (406 aa) initn: 2854 init1: 2854 opt: 2854 Z-score: 2709.9 bits: 510.5 E(): 3.5e-142 Smith-Waterman score: 2854; 99.507% identity (100.000% similar) in 406 aa overlap (38-443:1-406) 10 20 30 40 50 60 bm0708 ELVPIVFRSHPLGSTLPLSLSGPHQTKPKTMVHCAGCKRPILDRFLLNVLDRAWHVKCVQ :::::::::::::::::::::::::::::: gi|517 MVHCAGCKRPILDRFLLNVLDRAWHVKCVQ 10 20 30 70 80 90 100 110 120 bm0708 CCECKCNLTEKCFSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|517 CCECKCNLTEKCFSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFT 40 50 60 70 80 90 130 140 150 160 170 180 bm0708 CMMCNKQLSTGEELYIIDENKFVCKEDYLSNSSVAKENSLHSATTGSDPSLSPDSQDPSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|517 CMMCNKQLSTGEELYIIDENKFVCKEDYLSNSSVAKENSLHSATTGSDPSLSPDSQDPSQ 100 110 120 130 140 150 190 200 210 220 230 240 bm0708 DDAKDSESANVSDKEAGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIR :::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::: gi|517 DDAKDSESANVSDKEGGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIR 160 170 180 190 200 210 250 260 270 280 290 300 bm0708 EQLAQETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPRRMRPLVDRLEPGEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|517 EQLAQETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPRRMRPLVDRLEPGEL 220 230 240 250 260 270 310 320 330 340 350 360 bm0708 IPNGPFSFYGDYQSEYYGPGGNYDFFPQGPPSSQAQTPVDLPFVPSSGPSGTPLGGLEHP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: gi|517 IPNGPFSFYGDYQSEYYGPGGNYDFFPQGPPSSQAQTPVDLPFVPSSGPSGTPLGGLDHP 280 290 300 310 320 330 370 380 390 400 410 420 bm0708 LPGHHPSSEAQRFTDILAHPPGDSPSPEPSLPGPLHSMSAEVFGPSPPFSSLSVNGGASY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|517 LPGHHPSSEAQRFTDILAHPPGDSPSPEPSLPGPLHSMSAEVFGPSPPFSSLSVNGGASY 340 350 360 370 380 390 430 440 bm0708 GNHLSHPPEMNEAAVW :::::::::::::::: gi|517 GNHLSHPPEMNEAAVW 400 >>gi|74187870|dbj|BAE24561.1| unnamed protein product [M (406 aa) initn: 2838 init1: 2838 opt: 2838 Z-score: 2694.8 bits: 507.7 E(): 2.4e-141 Smith-Waterman score: 2838; 99.015% identity (100.000% similar) in 406 aa overlap (38-443:1-406) 10 20 30 40 50 60 bm0708 ELVPIVFRSHPLGSTLPLSLSGPHQTKPKTMVHCAGCKRPILDRFLLNVLDRAWHVKCVQ ::::::::::::::.::::::::::::::: gi|741 MVHCAGCKRPILDRLLLNVLDRAWHVKCVQ 10 20 30 70 80 90 100 110 120 bm0708 CCECKCNLTEKCFSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 CCECKCNLTEKCFSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFT 40 50 60 70 80 90 130 140 150 160 170 180 bm0708 CMMCNKQLSTGEELYIIDENKFVCKEDYLSNSSVAKENSLHSATTGSDPSLSPDSQDPSQ ::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::: gi|741 CMMCNKQLSTGEELYIIDENKFVCKEDYLSNSSVAKENSLNSATTGSDPSLSPDSQDPSQ 100 110 120 130 140 150 190 200 210 220 230 240 bm0708 DDAKDSESANVSDKEAGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIR :::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::: gi|741 DDAKDSESANVSDKEGGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIR 160 170 180 190 200 210 250 260 270 280 290 300 bm0708 EQLAQETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPRRMRPLVDRLEPGEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 EQLAQETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPRRMRPLVDRLEPGEL 220 230 240 250 260 270 310 320 330 340 350 360 bm0708 IPNGPFSFYGDYQSEYYGPGGNYDFFPQGPPSSQAQTPVDLPFVPSSGPSGTPLGGLEHP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: gi|741 IPNGPFSFYGDYQSEYYGPGGNYDFFPQGPPSSQAQTPVDLPFVPSSGPSGTPLGGLDHP 280 290 300 310 320 330 370 380 390 400 410 420 bm0708 LPGHHPSSEAQRFTDILAHPPGDSPSPEPSLPGPLHSMSAEVFGPSPPFSSLSVNGGASY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 LPGHHPSSEAQRFTDILAHPPGDSPSPEPSLPGPLHSMSAEVFGPSPPFSSLSVNGGASY 340 350 360 370 380 390 430 440 bm0708 GNHLSHPPEMNEAAVW :::::::::::::::: gi|741 GNHLSHPPEMNEAAVW 400 >>gi|55846812|gb|AAV67410.1| LIM homeobox protein 1 [Mac (403 aa) initn: 2836 init1: 2836 opt: 2836 Z-score: 2692.9 bits: 507.3 E(): 3.1e-141 Smith-Waterman score: 2836; 99.752% identity (100.000% similar) in 403 aa overlap (41-443:1-403) 20 30 40 50 60 70 bm0708 PIVFRSHPLGSTLPLSLSGPHQTKPKTMVHCAGCKRPILDRFLLNVLDRAWHVKCVQCCE :::::::::::::::::::::::::::::: gi|558 CAGCKRPILDRFLLNVLDRAWHVKCVQCCE 10 20 30 80 90 100 110 120 130 bm0708 CKCNLTEKCFSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|558 CKCNLTEKCFSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMM 40 50 60 70 80 90 140 150 160 170 180 190 bm0708 CNKQLSTGEELYIIDENKFVCKEDYLSNSSVAKENSLHSATTGSDPSLSPDSQDPSQDDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|558 CNKQLSTGEELYIIDENKFVCKEDYLSNSSVAKENSLHSATTGSDPSLSPDSQDPSQDDA 100 110 120 130 140 150 200 210 220 230 240 250 bm0708 KDSESANVSDKEAGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQL ::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::: gi|558 KDSESANVSDKEGGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQL 160 170 180 190 200 210 260 270 280 290 300 310 bm0708 AQETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPRRMRPLVDRLEPGELIPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|558 AQETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPRRMRPLVDRLEPGELIPN 220 230 240 250 260 270 320 330 340 350 360 370 bm0708 GPFSFYGDYQSEYYGPGGNYDFFPQGPPSSQAQTPVDLPFVPSSGPSGTPLGGLEHPLPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|558 GPFSFYGDYQSEYYGPGGNYDFFPQGPPSSQAQTPVDLPFVPSSGPSGTPLGGLEHPLPG 280 290 300 310 320 330 380 390 400 410 420 430 bm0708 HHPSSEAQRFTDILAHPPGDSPSPEPSLPGPLHSMSAEVFGPSPPFSSLSVNGGASYGNH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|558 HHPSSEAQRFTDILAHPPGDSPSPEPSLPGPLHSMSAEVFGPSPPFSSLSVNGGASYGNH 340 350 360 370 380 390 440 bm0708 LSHPPEMNEAAVW ::::::::::::: gi|558 LSHPPEMNEAAVW 400 >>gi|549846|gb|AAA21644.1| LIM domain transcription fact (404 aa) initn: 2805 init1: 1667 opt: 2805 Z-score: 2663.6 bits: 501.9 E(): 1.3e-139 Smith-Waterman score: 2805; 98.522% identity (99.015% similar) in 406 aa overlap (38-443:1-404) 10 20 30 40 50 60 bm0708 ELVPIVFRSHPLGSTLPLSLSGPHQTKPKTMVHCAGCKRPILDRFLLNVLDRAWHVKCVQ :::::::::::::::::::::::::::::: gi|549 MVHCAGCKRPILDRFLLNVLDRAWHVKCVQ 10 20 30 70 80 90 100 110 120 bm0708 CCECKCNLTEKCFSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFT :::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::: gi|549 CCECKCNLTEKCFSREGKLYCKNDFFRCFGTKCAGCRQGISPSDLVRRARSKVFHLNCFT 40 50 60 70 80 90 130 140 150 160 170 180 bm0708 CMMCNKQLSTGEELYIIDENKFVCKEDYLSNSSVAKENSLHSATTGSDPSLSPDSQDPSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|549 CMMCNKQLSTGEELYIIDENKFVCKEDYLSNSSVAKENSLHSATTGSDPSLSPDSQDPSQ 100 110 120 130 140 150 190 200 210 220 230 240 bm0708 DDAKDSESANVSDKEAGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIR ::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::: gi|549 DDAKDSESANVSDKEAGSNENDDQNLGAKRRGPGTTIKAKQLETLKAAFAATPKPTRHIR 160 170 180 190 200 210 250 260 270 280 290 300 bm0708 EQLAQETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPRRMRPLVDRLEPGEL ::::::::::::::::::::::::::::::::::.. :::::::::::::::::::::: gi|549 EQLAQETGLNMRVIQVWFQNRRSKERRMKQLSALAG--HAFFRSPRRMRPLVDRLEPGEL 220 230 240 250 260 310 320 330 340 350 360 bm0708 IPNGPFSFYGDYQSEYYGPGGNYDFFPQGPPSSQAQTPVDLPFVPSSGPSGTPLGGLEHP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|549 IPNGPFSFYGDYQSEYYGPGGNYDFFPQGPPSSQAQTPVDLPFVPSSGPSGTPLGGLEHP 270 280 290 300 310 320 370 380 390 400 410 420 bm0708 LPGHHPSSEAQRFTDILAHPPGDSPSPEPSLPGPLHSMSAEVFGPSPPFSSLSVNGGASY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|549 LPGHHPSSEAQRFTDILAHPPGDSPSPEPSLPGPLHSMSAEVFGPSPPFSSLSVNGGASY 330 340 350 360 370 380 430 440 bm0708 GNHLSHPPEMNEAAVW :::::::::::::::: gi|549 GNHLSHPPEMNEAAVW 390 400 >>gi|1708826|sp|P53411.1|LHX1_CHICK RecName: Full=LIM/ho (406 aa) initn: 2727 init1: 2727 opt: 2727 Z-score: 2589.7 bits: 488.2 E(): 1.7e-135 Smith-Waterman score: 2727; 94.335% identity (98.276% similar) in 406 aa overlap (38-443:1-406) 10 20 30 40 50 60 bm0708 ELVPIVFRSHPLGSTLPLSLSGPHQTKPKTMVHCAGCKRPILDRFLLNVLDRAWHVKCVQ :::::::::::::::::::::::::::::: gi|170 MVHCAGCKRPILDRFLLNVLDRAWHVKCVQ 10 20 30 70 80 90 100 110 120 bm0708 CCECKCNLTEKCFSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|170 CCECKCNLTEKCFSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFT 40 50 60 70 80 90 130 140 150 160 170 180 bm0708 CMMCNKQLSTGEELYIIDENKFVCKEDYLSNSSVAKENSLHSATTGSDPSLSPDSQDPSQ :::::::::::::::::::::::::::::.::..:::::::::::::::::::::::::: gi|170 CMMCNKQLSTGEELYIIDENKFVCKEDYLNNSNTAKENSLHSATTGSDPSLSPDSQDPSQ 100 110 120 130 140 150 190 200 210 220 230 240 bm0708 DDAKDSESANVSDKEAGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIR :::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::: gi|170 DDAKDSESANVSDKETGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIR 160 170 180 190 200 210 250 260 270 280 290 300 bm0708 EQLAQETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPRRMRPLVDRLEPGEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|170 EQLAQETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPRRMRPLVDRLEPGEL 220 230 240 250 260 270 310 320 330 340 350 360 bm0708 IPNGPFSFYGDYQSEYYGPGGNYDFFPQGPPSSQAQTPVDLPFVPSSGPSGTPLGGLEHP .:::::::::::::::::::.::.:::::::::::::::.::: ..:: :::::.:::: gi|170 LPNGPFSFYGDYQSEYYGPGANYEFFPQGPPSSQAQTPVELPFGAAGGPPGTPLGALEHP 280 290 300 310 320 330 370 380 390 400 410 420 bm0708 LPGHHPSSEAQRFTDILAHPPGDSPSPEPSLPGPLHSMSAEVFGPSPPFSSLSVNGGASY :::::: .::::: :.:::: ::::::::.::: :::::::::::::::::.::::::.: gi|170 LPGHHPPGEAQRFPDMLAHPAGDSPSPEPTLPGSLHSMSAEVFGPSPPFSSISVNGGANY 340 350 360 370 380 390 430 440 bm0708 GNHLSHPPEMNEAAVW :::::::::::::::: gi|170 GNHLSHPPEMNEAAVW 400 >>gi|8248965|gb|AAC60669.2| lateral and intermediate mes (407 aa) initn: 2300 init1: 2200 opt: 2707 Z-score: 2570.8 bits: 484.7 E(): 2e-134 Smith-Waterman score: 2707; 95.181% identity (95.663% similar) in 415 aa overlap (38-443:1-407) 10 20 30 40 50 bm0708 ELVPIVFRSHPLGSTLPLSLSGPHQTKPKTMVHCAGCKRPIL--------DRFLLNVLDR :::::::::::: :::::::::: gi|824 MVHCAGCKRPILARQVRPVLDRFLLNVLDR 10 20 30 60 70 80 90 100 110 bm0708 AWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSK : ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|824 A--------CECKCNLTEKCFSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSK 40 50 60 70 80 120 130 140 150 160 170 bm0708 VFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLSNSSVAKENSLHSATTGSDPSLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|824 VFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLSNSSVAKENSLHSATTGSDPSLS 90 100 110 120 130 140 180 190 200 210 220 230 bm0708 PDSQDPSQDDAKDSESANVSDKEAGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAAT :::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::: gi|824 PDSQDPSQDDAKDSESANVSDKEGGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAAT 150 160 170 180 190 200 240 250 260 270 280 290 bm0708 PKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPRRMRPLV ::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::: gi|824 PKPTRHIREQLAQETGLNMRVIQVWFQNRRSKEARMKQLSALGARRHAFFRSPRRMRPLV 210 220 230 240 250 260 300 310 320 330 340 350 bm0708 DRLEPGELIPNGPFSFYGDYQSEYYGPGGNYDFFPQGPPSSQAQTPVDLPFVPSSGPSGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|824 DRLEPGELIPNGPFSFYGDYQSEYYGPGGNYDFFPQGPPSSQAQTPVDLPFVPSSGPSGT 270 280 290 300 310 320 360 370 380 390 400 410 bm0708 PLGGLEHPLPGHH-PSSEAQRFTDILAHPPGDSPSPEPSLPGPLHSMSAEVFGPSPPFSS :::::.::::::: :::::::::::::::::::::::::::::::::::::::::::::: gi|824 PLGGLDHPLPGHHHPSSEAQRFTDILAHPPGDSPSPEPSLPGPLHSMSAEVFGPSPPFSS 330 340 350 360 370 380 420 430 440 bm0708 LSVNGGASYGNHLSHPPEMNEAAVW ::::::::::::::::::::::::: gi|824 LSVNGGASYGNHLSHPPEMNEAAVW 390 400 443 residues in 1 query sequences 3071326396 residues in 8985982 library sequences Tcomplib [34.26] (8 proc) start: Thu Jun 18 01:56:57 2009 done: Thu Jun 18 02:00:06 2009 Total Scan time: 1094.660 Total Display time: 0.120 Function used was FASTA [version 34.26.5 April 26, 2007]