hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-02000708/chunk_1/iprscan-20090618-02000708.nocrc
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Query sequence: bm07084
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00412.12.ls LIM domain                                     187.7    2.7e-53   2
PF00412.12.fs LIM domain                                     183.7    1.7e-52   2
PF00046.19.ls Homeobox domain                                 97.0    5.3e-26   1
PF00046.19.fs Homeobox domain                                 95.0    2.1e-25   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00412.12.ls   1/2      41    97 ..     1    61 []    92.2  1.4e-24
PF00412.12.fs   1/2      41    97 ..     1    61 []    90.3  1.7e-25
PF00412.12.fs   2/2     100   160 ..     1    61 []    93.4  2.1e-26
PF00412.12.ls   2/2     100   160 ..     1    61 []    95.4  1.6e-25
PF00046.19.fs   1/1     218   274 ..     1    57 []    95.0  2.1e-25
PF00046.19.ls   1/1     218   274 ..     1    57 []    97.0  5.3e-26

Alignments of top-scoring domains:
PF00412.12.ls: domain 1 of 2, from 41 to 97: score 92.2, E = 1.4e-24
                   *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg
                      CagC++pI+dr+l+ ++ld++wH++C +C++C+++L+e+  +f+++g
     bm07084    41    CAGCKRPILDRFLL-NVLDRAWHVKCVQCCECKCNLTEK--CFSREG 84   

                   sklYCkhDyyklfg<-*
                    klYCk+D++++fg   
     bm07084    85 -KLYCKNDFFRCFG    97   

PF00412.12.fs: domain 1 of 2, from 41 to 97: score 90.3, E = 1.7e-25
                   *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg
                      CagC++pI+dr+l+ ++ld++wH++C +C++C+++L+e+  +f+++g
     bm07084    41    CAGCKRPILDRFLL-NVLDRAWHVKCVQCCECKCNLTEK--CFSREG 84   

                   sklYCkhDyyklfg<-*
                    klYCk+D++++fg   
     bm07084    85 -KLYCKNDFFRCFG    97   

PF00412.12.fs: domain 2 of 2, from 100 to 160: score 93.4, E = 2.1e-26
                   *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg
                      CagC+++I++ +lvrrA+ kv+H++CF+C+ C+k+L++g e +++d+
     bm07084   100    CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDE 146  

                   sklYCkhDyyklfg<-*
                   +k++Ck Dy+ + +   
     bm07084   147 NKFVCKEDYLSNSS    160  

PF00412.12.ls: domain 2 of 2, from 100 to 160: score 95.4, E = 1.6e-25
                   *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg
                      CagC+++I++ +lvrrA+ kv+H++CF+C+ C+k+L++g e +++d+
     bm07084   100    CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDE 146  

                   sklYCkhDyyklfg<-*
                   +k++Ck Dy+ + +   
     bm07084   147 NKFVCKEDYLSNSS    160  

PF00046.19.fs: domain 1 of 1, from 218 to 274: score 95.0, E = 2.1e-25
                   *->rrkRTtftpeQleeLEkeFqknrYPsreeReeLAkkLgLterqVkvW
                      r +RTt+ + Qle+L+++F+ +++P+r+ Re+LA+++gL  r+++vW
     bm07084   218    RGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVW 264  

                   FQNRRaKwKk<-*
                   FQNRR K+++   
     bm07084   265 FQNRRSKERR    274  

PF00046.19.ls: domain 1 of 1, from 218 to 274: score 97.0, E = 5.3e-26
                   *->rrkRTtftpeQleeLEkeFqknrYPsreeReeLAkkLgLterqVkvW
                      r +RTt+ + Qle+L+++F+ +++P+r+ Re+LA+++gL  r+++vW
     bm07084   218    RGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVW 264  

                   FQNRRaKwKk<-*
                   FQNRR K+++   
     bm07084   265 FQNRRSKERR    274  

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