hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-02125139/chunk_1/iprscan-20090618-02125139.nocrc
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Query sequence: bm09321
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
PF00010.16.ls Helix-loop-helix DNA-binding domain         74.3    3.7e-19   1
PF00010.16.fs Helix-loop-helix DNA-binding domain         72.3    8.5e-19   1
PF07527.3.fs Hairy Orange                                64.9    7.8e-18   1
PF07527.3.ls Hairy Orange                                66.8    6.3e-17   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PF00010.16.fs   1/1      95   148 ..     1    53 []    72.3  8.5e-19
PF00010.16.ls   1/1      95   148 ..     1    53 []    74.3  3.7e-19
PF07527.3.fs   1/1     164   210 ..     1    48 []    64.9  7.8e-18
PF07527.3.ls   1/1     164   210 ..     1    48 []    66.8  6.3e-17

Alignments of top-scoring domains:
PF00010.16.fs: domain 1 of 1, from 95 to 148: score 72.3, E = 8.5e-19
                   *->rRrahnarERrRRdriNdafeeLrellPtla....pskKlsKaeiLr
                      rRr   ++E+rRRdriN++++eLr+l+P+ a +++ s Kl+KaeiL+
     bm09321    95    RRR--GIIEKRRRDRINNSLSELRRLVPS-AfekqGSAKLEKAEILQ 138  

                   lAveYIksLq<-*
                   ++v+++k+L+   
     bm09321   139 MTVDHLKMLH    148  

PF00010.16.ls: domain 1 of 1, from 95 to 148: score 74.3, E = 3.7e-19
                   *->rRrahnarERrRRdriNdafeeLrellPtla....pskKlsKaeiLr
                      rRr   ++E+rRRdriN++++eLr+l+P+ a +++ s Kl+KaeiL+
     bm09321    95    RRR--GIIEKRRRDRINNSLSELRRLVPS-AfekqGSAKLEKAEILQ 138  

                   lAveYIksLq<-*
                   ++v+++k+L+   
     bm09321   139 MTVDHLKMLH    148  

PF07527.3.fs: domain 1 of 1, from 164 to 210: score 64.9, E = 7.8e-18
                   *->dkyraGfseClnEvarfLsshegldetkdpvrarLlsHLqhclnelp
                      d+++ Gf+eCl+Evar+Ls +egld++ dp+r rL+sHL++++++++
     bm09321   164    DYRSLGFRECLAEVARYLSIIEGLDAS-DPLRVRLVSHLNNYASQRE 209  

                   q<-*
                       
     bm09321   210 A    210  

PF07527.3.ls: domain 1 of 1, from 164 to 210: score 66.8, E = 6.3e-17
                   *->dkyraGfseClnEvarfLsshegldetkdpvrarLlsHLqhclnelp
                      d+++ Gf+eCl+Evar+Ls +egld++ dp+r rL+sHL++++++++
     bm09321   164    DYRSLGFRECLAEVARYLSIIEGLDAS-DPLRVRLVSHLNNYASQRE 209  

                   q<-*
                       
     bm09321   210 A    210  

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