hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-02125139/chunk_1/iprscan-20090618-02125139.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bm09321 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00353 63.5 2.7e-14 1 SM00511 63.0 3.7e-14 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00353 1/1 98 153 .. 1 61 [] 63.5 2.7e-14 SM00511 1/1 163 210 .. 1 47 [] 63.0 3.7e-14 Alignments of top-scoring domains: SM00353: domain 1 of 1, from 98 to 153: score 63.5, E = 2.7e-14 *->narERrlrRRekiNeqafdeLrslvPtlpkgggnskKlsKasiLrlA ++E+ rRR++iN+ +++eLr+lvP ++ +++ s Kl+Ka+iL+++ bm09321 98 GIIEK--RRRDRINN-SLSELRRLVPSAF-EKQGSAKLEKAEILQMT 140 ieYIrksLqeqlqe<-* ++++ k+L + + bm09321 141 VDHL-KMLHTAGGK 153 SM00511: domain 1 of 1, from 163 to 210: score 63.0, E = 3.7e-14 *->ssFr.aGYreCanEVsrfLsqlpgldpsddvrarLlsHLqqhlnqle +++r+ G+reC++EV+r+Ls +gld sd++r rL+sHL++ ++q+e bm09321 163 MDYRsLGFRECLAEVARYLSIIEGLDASDPLRVRLVSHLNNYASQRE 209 q<-* bm09321 210 A 210 //