# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Obm09917.fasta.nr -Q bm09917.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 bm09917, 430 aa vs /cdna2/lib/nr/nr library 3071326396 residues in 8985982 sequences statistics sampled from 60000 to 8974217 sequences Expectation_n fit: rho(ln(x))= 5.8000+/-0.000196; mu= 9.6085+/- 0.011 mean_var=104.9906+/-20.197, 0's: 18 Z-trim: 48 B-trim: 38 in 1/64 Lambda= 0.125170 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(8985982) gi|46623338|gb|AAH69251.1| Meis homeobox 3 [Homo s ( 358) 2502 462.0 1.2e-127 gi|205810944|sp|A8K0S8.1|ME3L2_HUMAN RecName: Full ( 358) 2357 435.8 8.9e-120 gi|114678003|ref|XP_001152907.1| PREDICTED: simila ( 419) 2320 429.2 1e-117 gi|13277729|gb|AAH03762.1| Meis3 protein [Mus musc ( 361) 2228 412.5 9.3e-113 gi|20147189|gb|AAM09846.1| MEIS1-related protein 2 ( 267) 1829 340.3 3.6e-91 gi|205815339|sp|A6NDR6.2|ME3L1_HUMAN RecName: Full ( 274) 1750 326.1 7.3e-87 gi|109080576|ref|XP_001090464.1| PREDICTED: Meis1, ( 362) 1583 296.0 1.1e-77 gi|109080574|ref|XP_001090004.1| PREDICTED: Meis1, ( 375) 1583 296.0 1.1e-77 gi|114577751|ref|XP_001166874.1| PREDICTED: simila ( 449) 1479 277.3 5.6e-72 gi|62088490|dbj|BAD92692.1| Homeobox protein Meis3 ( 250) 1467 274.9 1.7e-71 gi|59803105|sp|Q99687.3|MEIS3_HUMAN RecName: Full= ( 375) 1467 275.1 2.2e-71 gi|8977894|emb|CAB95771.1| hypothetical protein [H ( 382) 1467 275.1 2.3e-71 gi|109103199|ref|XP_001092887.1| PREDICTED: Meis1, ( 460) 1397 262.5 1.6e-67 gi|149056904|gb|EDM08335.1| Meis1, myeloid ecotrop ( 378) 1363 256.3 1e-65 gi|169642478|gb|AAI60854.1| Meis3 protein [Rattus ( 429) 1363 256.4 1.1e-65 gi|109734346|gb|AAI17533.1| Meis homeobox 3 [Mus m ( 378) 1353 254.5 3.5e-65 gi|3024124|sp|P97368.1|MEIS3_MOUSE RecName: Full=H ( 378) 1353 254.5 3.5e-65 gi|1679674|gb|AAB19195.1| Meis1-related protein 2 ( 209) 1321 248.5 1.3e-63 gi|73948091|ref|XP_541536.2| PREDICTED: similar to ( 393) 1310 246.8 7.9e-63 gi|73969830|ref|XP_866263.1| PREDICTED: similar to ( 306) 1260 237.6 3.4e-60 gi|117558113|gb|AAI27369.1| Meis2 protein [Xenopus ( 368) 1216 229.8 9.7e-58 gi|11877245|emb|CAC19011.1| meis2.1 protein [Danio ( 393) 1181 223.5 8.1e-56 gi|6671101|gb|AAF23096.1| meis2 [Danio rerio] ( 393) 1173 222.0 2.2e-55 gi|4106792|gb|AAD02948.1| Meis3 homeoprotein [Xeno ( 385) 1117 211.9 2.4e-52 gi|218526909|sp|Q7ZY13.2|MEI3B_XENLA RecName: Full ( 451) 1084 206.0 1.7e-50 gi|89268747|emb|CAJ82625.1| Meis1, myeloid ecotrop ( 447) 1083 205.8 1.9e-50 gi|49523087|gb|AAH75589.1| Meis homeobox 3 [Xenopu ( 453) 1083 205.8 1.9e-50 gi|218526910|sp|Q6DIF3.2|MEIS3_XENTR RecName: Full ( 453) 1083 205.8 1.9e-50 gi|82180070|sp|Q5U4X3.1|MEI3A_XENLA RecName: Full= ( 453) 1080 205.3 2.8e-50 gi|27881708|gb|AAH44024.1| Meis3-b protein [Xenopu ( 451) 1079 205.1 3.1e-50 gi|41944540|gb|AAH65977.1| Meis4.1a protein [Danio ( 380) 1062 202.0 2.3e-49 gi|33604041|gb|AAH56317.1| Myeloid ecotropic viral ( 380) 1060 201.6 3e-49 gi|19263507|gb|AAH25404.1| Meis homeobox 3 [Homo s ( 421) 1043 198.6 2.7e-48 gi|109080572|ref|XP_001090351.1| PREDICTED: Meis1, ( 392) 1024 195.1 2.8e-47 gi|119612761|gb|EAW92355.1| Meis1, myeloid ecotrop ( 381) 1015 193.5 8.4e-47 gi|42406379|gb|AAH65980.1| Meis2.2 protein [Danio ( 390) 1015 193.5 8.5e-47 gi|14190146|gb|AAK55553.1|AF375871_1 transcription ( 388) 1013 193.1 1.1e-46 gi|3024120|sp|P79937.1|MEIS1_XENLA RecName: Full=H ( 390) 1011 192.8 1.4e-46 gi|126303756|ref|XP_001374682.1| PREDICTED: simila ( 391) 1010 192.6 1.6e-46 gi|73999713|ref|XP_857017.1| PREDICTED: similar to ( 306) 1007 192.0 1.9e-46 gi|119612759|gb|EAW92353.1| Meis1, myeloid ecotrop ( 306) 1007 192.0 1.9e-46 gi|16306683|gb|AAH01516.1| Meis homeobox 2 [Homo s ( 381) 1007 192.0 2.3e-46 gi|6573177|gb|AAF17581.1|AF202934_1 myeloid ecotro ( 390) 1007 192.1 2.3e-46 gi|74153137|dbj|BAE34540.1| unnamed protein produc ( 393) 1007 192.1 2.3e-46 gi|73999717|ref|XP_857101.1| PREDICTED: similar to ( 393) 1007 192.1 2.3e-46 gi|73999707|ref|XP_856897.1| PREDICTED: similar to ( 394) 1007 192.1 2.3e-46 gi|8925848|gb|AAF81639.1|AF179896_1 TALE homeobox ( 394) 1007 192.1 2.3e-46 gi|119620298|gb|EAW99892.1| Meis1, myeloid ecotrop ( 390) 1002 191.1 4.3e-46 gi|148675870|gb|EDL07817.1| myeloid ecotropic vira ( 440) 1002 191.2 4.7e-46 gi|2495285|sp|Q60954.1|MEIS1_MOUSE RecName: Full=H ( 390) 994 189.7 1.2e-45 >>gi|46623338|gb|AAH69251.1| Meis homeobox 3 [Homo sapie (358 aa) initn: 2502 init1: 2502 opt: 2502 Z-score: 2449.1 bits: 462.0 E(): 1.2e-127 Smith-Waterman score: 2502; 100.000% identity (100.000% similar) in 358 aa overlap (73-430:1-358) 50 60 70 80 90 100 bm0991 RGPSGAAAPGCALPRGQALEGPRSCRRPQPMARRYDELPHYPGIVDGPAALASFPETVPA :::::::::::::::::::::::::::::: gi|466 MARRYDELPHYPGIVDGPAALASFPETVPA 10 20 30 110 120 130 140 150 160 bm0991 VPGPYGPHRPPQPLPPGLDSDGLKREKDEIYGHPLFPLLALVFEKCELATCSPRDGAGAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|466 VPGPYGPHRPPQPLPPGLDSDGLKREKDEIYGHPLFPLLALVFEKCELATCSPRDGAGAG 40 50 60 70 80 90 170 180 190 200 210 220 bm0991 LGTPPGGDVCSSDSFNEDIAAFAKQVRSERPLFSSNPELDNLMIQAIQVLRFHLLELEKG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|466 LGTPPGGDVCSSDSFNEDIAAFAKQVRSERPLFSSNPELDNLMIQAIQVLRFHLLELEKG 100 110 120 130 140 150 230 240 250 260 270 280 bm0991 KMPIDLVIEDRDGGCREDFEDYPASCPSLPDQNNMWIRDHEDSGSVHLGTPGPSSGGLAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|466 KMPIDLVIEDRDGGCREDFEDYPASCPSLPDQNNMWIRDHEDSGSVHLGTPGPSSGGLAS 160 170 180 190 200 210 290 300 310 320 330 340 bm0991 QSGDNSSDQGDGLDTSVASPSSGGEDEDLDQERRRNKKRGIFPKVATNIMRAWLFQHLSH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|466 QSGDNSSDQGDGLDTSVASPSSGGEDEDLDQERRRNKKRGIFPKVATNIMRAWLFQHLSH 220 230 240 250 260 270 350 360 370 380 390 400 bm0991 PYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRTGQGAAFSPEGQPIGGY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|466 PYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRTGQGAAFSPEGQPIGGY 280 290 300 310 320 330 410 420 430 bm0991 TETQPHVAVRPPGSVGMSLNLEGEWHYL :::::::::::::::::::::::::::: gi|466 TETQPHVAVRPPGSVGMSLNLEGEWHYL 340 350 >>gi|205810944|sp|A8K0S8.1|ME3L2_HUMAN RecName: Full=Put (358 aa) initn: 2357 init1: 2357 opt: 2357 Z-score: 2307.6 bits: 435.8 E(): 8.9e-120 Smith-Waterman score: 2357; 94.134% identity (97.765% similar) in 358 aa overlap (73-430:1-358) 50 60 70 80 90 100 bm0991 RGPSGAAAPGCALPRGQALEGPRSCRRPQPMARRYDELPHYPGIVDGPAALASFPETVPA ::::::::::::.:.:::::::.:::.::: gi|205 MARRYDELPHYPSIADGPAALAGFPEAVPA 10 20 30 110 120 130 140 150 160 bm0991 VPGPYGPHRPPQPLPPGLDSDGLKREKDEIYGHPLFPLLALVFEKCELATCSPRDGAGAG .::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::: gi|205 APGPYGPHRPPQPLPPGLDSDGLKRDKDEIYGHPLFPLLALVFEKCELATCSPRDGAGAG 40 50 60 70 80 90 170 180 190 200 210 220 bm0991 LGTPPGGDVCSSDSFNEDIAAFAKQVRSERPLFSSNPELDNLMIQAIQVLRFHLLELEKG :::: ::::::::::::: .:::::::::::.:::::::::::::::::::::::::::: gi|205 LGTPRGGDVCSSDSFNEDNTAFAKQVRSERPFFSSNPELDNLMIQAIQVLRFHLLELEKG 100 110 120 130 140 150 230 240 250 260 270 280 bm0991 KMPIDLVIEDRDGGCREDFEDYPASCPSLPDQNNMWIRDHEDSGSVHLGTPGPSSGGLAS :::::::::::::::::::::::::: :::::::.::::::::::::::::::::::::: gi|205 KMPIDLVIEDRDGGCREDFEDYPASCLSLPDQNNIWIRDHEDSGSVHLGTPGPSSGGLAS 160 170 180 190 200 210 290 300 310 320 330 340 bm0991 QSGDNSSDQGDGLDTSVASPSSGGEDEDLDQERRRNKKRGIFPKVATNIMRAWLFQHLSH :::::::::: ::::::::::::::::::::: ::::::::::::::::::::::::: : gi|205 QSGDNSSDQGVGLDTSVASPSSGGEDEDLDQEPRRNKKRGIFPKVATNIMRAWLFQHLWH 220 230 240 250 260 270 350 360 370 380 390 400 bm0991 PYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRTGQGAAFSPEGQPIGGY :::::::::::.::::::::::::::::::::.:::::::::: :::::::::::::::: gi|205 PYPSEEQKKQLVQDTGLTILQVNNWFINARRRMVQPMIDQSNRIGQGAAFSPEGQPIGGY 280 290 300 310 320 330 410 420 430 bm0991 TETQPHVAVRPPGSVGMSLNLEGEWHYL :::.:::: :::.::::::::::::::: gi|205 TETEPHVAFRPPASVGMSLNLEGEWHYL 340 350 >>gi|114678003|ref|XP_001152907.1| PREDICTED: similar to (419 aa) initn: 2315 init1: 2315 opt: 2320 Z-score: 2270.6 bits: 429.2 E(): 1e-117 Smith-Waterman score: 2320; 92.412% identity (95.122% similar) in 369 aa overlap (46-414:8-373) 20 30 40 50 60 70 bm0991 PARRLPLTAAGVGGRAPGLLPTPWRQHRGPSGAAAPGCALPRGQALEGPRSCRRPQPMAR .:.. : : : :. ::: . . . gi|114 MSGISAWTGSSLPTEAAP-GD-LEGLKRGGS-DTWGP 10 20 30 80 90 100 110 120 130 bm0991 RYDELPHYPGIVDGPAALASFPETVPAVPGPYGPHRPPQPLPPGLDSDGLKREKDEIYGH .::::::::::::::::::.:::.: :::::::::::::::::::::::::::::::::: gi|114 QYDELPHYPGIVDGPAALAGFPEAVTAVPGPYGPHRPPQPLPPGLDSDGLKREKDEIYGH 40 50 60 70 80 90 140 150 160 170 180 190 bm0991 PLFPLLALVFEKCELATCSPRDGAGAGLGTPPGGDVCSSDSFNEDIAAFAKQVRSERPLF ::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::: gi|114 PLFPLLALVFEKCELATCSPRDGAGAGLGTPHGGDVCSSDSFNEDIAAFAKQVRSERPLF 100 110 120 130 140 150 200 210 220 230 240 250 bm0991 SSNPELDNLMIQAIQVLRFHLLELEKGKMPIDLVIEDRDGGCREDFEDYPASCPSLPDQN ::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::: gi|114 SSNPELDNLMIQAIQVLRFHLLELEKGKMPIDLVIEDRDGGYREDFEDYPASCPSLPDQN 160 170 180 190 200 210 260 270 280 290 300 310 bm0991 NMWIRDHEDSGSVHLGTPGPSSGGLASQSGDNSSDQGDGLDTSVASPSSGGEDEDLDQER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 NMWIRDHEDSGSVHLGTPGPSSGGLASQSGDNSSDQGDGLDTSVASPSSGGEDEDLDQER 220 230 240 250 260 270 320 330 340 350 360 370 bm0991 RRNKKRGIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 RRNKKRGIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRI 280 290 300 310 320 330 380 390 400 410 420 430 bm0991 VQPMIDQSNRTGQGAAFSPEGQPIGGYTETQPHVAVRPPGSVGMSLNLEGEWHYL ::::::::::::::::::::::::::::::::::::::: gi|114 VQPMIDQSNRTGQGAAFSPEGQPIGGYTETQPHVAVRPPDPASGCDPQRYTCLWFPPGPP 340 350 360 370 380 390 gi|114 ASGPHLQRPLCSTPTSLGPCWDMGA 400 410 >>gi|13277729|gb|AAH03762.1| Meis3 protein [Mus musculus (361 aa) initn: 2122 init1: 2122 opt: 2228 Z-score: 2181.7 bits: 412.5 E(): 9.3e-113 Smith-Waterman score: 2228; 88.920% identity (95.845% similar) in 361 aa overlap (73-430:1-361) 50 60 70 80 90 100 bm0991 RGPSGAAAPGCALPRGQALEGPRSCRRPQPMARRYDELPHYPGIVDGPAALASFPETVPA :::::::: :::::.. .::::: :..:. gi|132 MARRYDELRHYPGITEHMTALASFSEAAPS 10 20 30 110 120 130 140 150 bm0991 VP---GPYGPHRPPQPLPPGLDSDGLKREKDEIYGHPLFPLLALVFEKCELATCSPRDGA :: ::: :::::: ::::::.::::::.:::::::::::::::::::::::::::: gi|132 VPRAPGPYTPHRPPQLQAPGLDSDSLKREKDDIYGHPLFPLLALVFEKCELATCSPRDGA 40 50 60 70 80 90 160 170 180 190 200 210 bm0991 GAGLGTPPGGDVCSSDSFNEDIAAFAKQVRSERPLFSSNPELDNLMIQAIQVLRFHLLEL .::::.::::::::::::::::::::::.:::::::::::::::::.::::::::::::: gi|132 SAGLGSPPGGDVCSSDSFNEDIAAFAKQIRSERPLFSSNPELDNLMVQAIQVLRFHLLEL 100 110 120 130 140 150 220 230 240 250 260 270 bm0991 EKGKMPIDLVIEDRDGGCREDFEDYPASCPSLPDQNNMWIRDHEDSGSVHLGTPGPSSGG ::::::::::::::::.::::.::: ::::::::::. :::::::::::::::::::::: gi|132 EKGKMPIDLVIEDRDGSCREDLEDYAASCPSLPDQNTTWIRDHEDSGSVHLGTPGPSSGG 160 170 180 190 200 210 280 290 300 310 320 330 bm0991 LASQSGDNSSDQGDGLDTSVASPSSGGEDEDLDQERRRNKKRGIFPKVATNIMRAWLFQH :::::::::::::::::::::::::.::::::: :::::::::::::::::::::::::: gi|132 LASQSGDNSSDQGDGLDTSVASPSSAGEDEDLDLERRRNKKRGIFPKVATNIMRAWLFQH 220 230 240 250 260 270 340 350 360 370 380 390 bm0991 LSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRTGQGAAFSPEGQPI :::::::::::::::::::::::::::::::::::::::::::::::::::.:.:::::. gi|132 LSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRTGQGASFNPEGQPM 280 290 300 310 320 330 400 410 420 430 bm0991 GGYTETQPHVAVRPPGSVGMSLNLEGEWHYL .:.:::::.:.:: :::.::.:::::::::: gi|132 AGFTETQPQVTVRTPGSMGMNLNLEGEWHYL 340 350 360 >>gi|20147189|gb|AAM09846.1| MEIS1-related protein 2 [Ho (267 aa) initn: 1829 init1: 1829 opt: 1829 Z-score: 1794.0 bits: 340.3 E(): 3.6e-91 Smith-Waterman score: 1829; 99.251% identity (99.625% similar) in 267 aa overlap (164-430:1-267) 140 150 160 170 180 190 bm0991 GHPLFPLLALVFEKCELATCSPRDGAGAGLGTPPGGDVCSSDSFNEDIAAFAKQVRSERP :::::::::::::::::::::::::::::: gi|201 GTPPGGDVCSSDSFNEDIAAFAKQVRSERP 10 20 30 200 210 220 230 240 250 bm0991 LFSSNPELDNLMIQAIQVLRFHLLELEKGKMPIDLVIEDRDGGCREDFEDYPASCPSLPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 LFSSNPELDNLMIQAIQVLRFHLLELEKGKMPIDLVIEDRDGGCREDFEDYPASCPSLPD 40 50 60 70 80 90 260 270 280 290 300 310 bm0991 QNNMWIRDHEDSGSVHLGTPGPSSGGLASQSGDNSSDQGDGLDTSVASPSSGGEDEDLDQ :::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::: gi|201 QNNMWIRDHEDSGSVHLGTPGPSSGGLASQSGDNSSDQGNGLDTSVASPSSGGEDEDLDQ 100 110 120 130 140 150 320 330 340 350 360 370 bm0991 ERRRNKKRGIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARR ::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::: gi|201 ERRRNKKRGIFPKVATNIMRAWLVQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARR 160 170 180 190 200 210 380 390 400 410 420 430 bm0991 RIVQPMIDQSNRTGQGAAFSPEGQPIGGYTETQPHVAVRPPGSVGMSLNLEGEWHYL ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 RIVQPMIDQSNRTGQGAAFSPEGQPIGGYTETQPHVAVRPPGSVGMSLNLEGEWHYL 220 230 240 250 260 >>gi|205815339|sp|A6NDR6.2|ME3L1_HUMAN RecName: Full=Put (274 aa) initn: 1748 init1: 1748 opt: 1750 Z-score: 1716.8 bits: 326.1 E(): 7.3e-87 Smith-Waterman score: 1750; 93.773% identity (95.604% similar) in 273 aa overlap (158-430:2-274) 130 140 150 160 170 180 bm0991 EKDEIYGHPLFPLLALVFEKCELATCSPRDGAGAGLGTPPGGDVCSSDSFNEDIAAFAKQ : : : : ::::::::::::: .::::: gi|205 MGPELGWGHPRGGDVCSSDSFNEDNTAFAKQ 10 20 30 190 200 210 220 230 240 bm0991 VRSERPLFSSNPELDNLMIQAIQVLRFHLLELEKGKMPIDLVIEDRDGGCREDFEDYPAS ::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|205 VRSERPFFSSNPELDNLMIQAIQVLRFHLLELEKGKMPIDLVIEDRDGGCREDFEDYPAS 40 50 60 70 80 90 250 260 270 280 290 300 bm0991 CPSLPDQNNMWIRDHEDSGSVHLGTPGPSSGGLASQSGDNSSDQGDGLDTSVASPSSGGE :::::::::.::::::::::::::::::::::::::::::::::: :::::::::::::: gi|205 CPSLPDQNNIWIRDHEDSGSVHLGTPGPSSGGLASQSGDNSSDQGVGLDTSVASPSSGGE 100 110 120 130 140 150 310 320 330 340 350 360 bm0991 DEDLDQERRRNKKRGIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNW ::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|205 DEDLDQEPRRNKKRGIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNW 160 170 180 190 200 210 370 380 390 400 410 420 bm0991 FINARRRIVQPMIDQSNRTGQGAAFSPEGQPIGGYTETQPHVAVRPPGSVGMSLNLEGEW ::::::::::::::::::::::::::::::::::::::.:::: : :.::::::: :::: gi|205 FINARRRIVQPMIDQSNRTGQGAAFSPEGQPIGGYTETEPHVAFRAPASVGMSLNSEGEW 220 230 240 250 260 270 430 bm0991 HYL ::: gi|205 HYL >>gi|109080576|ref|XP_001090464.1| PREDICTED: Meis1, mye (362 aa) initn: 1622 init1: 1001 opt: 1583 Z-score: 1552.2 bits: 296.0 E(): 1.1e-77 Smith-Waterman score: 1583; 67.688% identity (83.287% similar) in 359 aa overlap (81-430:14-362) 60 70 80 90 100 110 bm0991 PGCALPRGQALEGPRSCRRPQPMARRYDELPHYPGIVDGPAALASFPETVPAVPGPYGPH :: : . : : . :: : gi|109 MDGVGVPASMYGDPHAPRPIPPVHHLNHGPPL--HATQHYGAH 10 20 30 40 120 130 140 150 160 bm0991 RP-PQPLPPGLDS---DGLKREKDEIYGHPLFPLLALVFEKCELATCSPRDGAGAGLGTP : :. .: .. : :.:::.:: ::::::::::::::::::::::.::. . : gi|109 APHPNVMPASMGSAVNDALKRDKDAIYGHPLFPLLALVFEKCELATCTPREPGVA----- 50 60 70 80 90 170 180 190 200 210 220 bm0991 PGGDVCSSDSFNEDIAAFAKQVRSERPLFSSNPELDNLMIQAIQVLRFHLLELEKGKMPI :::::::::::::::.::::::.:.:::::::::::::::::::::::::::::::::: gi|109 -GGDVCSSDSFNEDIAVFAKQVRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKGKMPI 100 110 120 130 140 150 230 240 250 260 270 280 bm0991 DLVIEDRDGGCREDFEDYPASCPSLPDQN-NMWIRDHEDSGSVH-LGTPGPSSGGLASQS ::::..:::. . : :. .: .: :.: . : :::.:. :.: ::::::::: :::: gi|109 DLVIDERDGSSKSDHEELSGSSTNLADHNPSSW-RDHDDATSTHSAGTPGPSSGGHASQS 160 170 180 190 200 210 290 300 310 320 330 340 bm0991 GDNSSDQGDGLDTSVASPSSGGEDEDLDQERRRNKKRGIFPKVATNIMRAWLFQHLSHPY :::::.::::::.:::::..: .:.: :....:.::::::::::::::::::::::.::: gi|109 GDNSSEQGDGLDNSVASPGTG-DDDDPDKDKKRQKKRGIFPKVATNIMRAWLFQHLTHPY 220 230 240 250 260 270 350 360 370 380 390 400 bm0991 PSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRTG-QGAAFSPEGQPIGGYT :::::::::::::::::::::::::::::::::::::::::.: ::::.::::::.:... gi|109 PSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAGNQGAAYSPEGQPMGSFV 280 290 300 310 320 330 410 420 430 bm0991 -ETQPHVAVRPPGS-VGMSLNLEGEWHYL . : :...:: :: .::.....:.:::. gi|109 LDGQQHMGIRPAGSGMGMNMGMDGQWHYM 340 350 360 >>gi|109080574|ref|XP_001090004.1| PREDICTED: Meis1, mye (375 aa) initn: 1654 init1: 1001 opt: 1583 Z-score: 1552.0 bits: 296.0 E(): 1.1e-77 Smith-Waterman score: 1651; 66.927% identity (83.073% similar) in 384 aa overlap (73-430:1-375) 50 60 70 80 90 bm0991 RGPSGAAAPGCALPRGQALEGPRSCRRPQPMARRYDELPHYPGIVDG---PAALASFPET ::.:::::::: :. :: ::.. . :.. gi|109 MAQRYDELPHYGGM-DGVGVPASMYGDPHA 10 20 100 110 120 130 140 bm0991 VPAVP-------GP-------YGPHRP-PQPLPPGLDS---DGLKREKDEIYGHPLFPLL .: :: :: : : :. .: .. : :.:::.:: :::::::::: gi|109 PRPIPPVHHLNHGPPLHATQHYGAHAPHPNVMPASMGSAVNDALKRDKDAIYGHPLFPLL 30 40 50 60 70 80 150 160 170 180 190 200 bm0991 ALVFEKCELATCSPRDGAGAGLGTPPGGDVCSSDSFNEDIAAFAKQVRSERPLFSSNPEL ::::::::::::.::. . :: ::::::::::::::.::::::.:.::::::::: gi|109 ALVFEKCELATCTPREPGVAG------GDVCSSDSFNEDIAVFAKQVRAEKPLFSSNPEL 90 100 110 120 130 140 210 220 230 240 250 260 bm0991 DNLMIQAIQVLRFHLLELEKGKMPIDLVIEDRDGGCREDFEDYPASCPSLPDQN-NMWIR :::::::::::::::::::::::::::::..:::. . : :. .: .: :.: . : : gi|109 DNLMIQAIQVLRFHLLELEKGKMPIDLVIDERDGSSKSDHEELSGSSTNLADHNPSSW-R 150 160 170 180 190 200 270 280 290 300 310 bm0991 DHEDSGSVH-LGTPGPSSGGLASQSGDNSSDQGDGLDTSVASPSSGGEDEDLDQERRRNK ::.:. :.: ::::::::: :::::::::.::::::.:::::..: .:.: :....:.: gi|109 DHDDATSTHSAGTPGPSSGGHASQSGDNSSEQGDGLDNSVASPGTG-DDDDPDKDKKRQK 210 220 230 240 250 260 320 330 340 350 360 370 bm0991 KRGIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPM :::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::: gi|109 KRGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPM 270 280 290 300 310 320 380 390 400 410 420 430 bm0991 IDQSNRTG-QGAAFSPEGQPIGGYT-ETQPHVAVRPPGS-VGMSLNLEGEWHYL ::::::.: ::::.::::::.:... . : :...:: :: .::.....:.:::. gi|109 IDQSNRAGNQGAAYSPEGQPMGSFVLDGQQHMGIRPAGSGMGMNMGMDGQWHYM 330 340 350 360 370 >>gi|114577751|ref|XP_001166874.1| PREDICTED: similar to (449 aa) initn: 1545 init1: 678 opt: 1479 Z-score: 1449.5 bits: 277.3 E(): 5.6e-72 Smith-Waterman score: 1537; 65.041% identity (82.385% similar) in 369 aa overlap (73-419:1-360) 50 60 70 80 90 bm0991 RGPSGAAAPGCALPRGQALEGPRSCRRPQPMARRYDELPHYPGIVDG---PAALASFPET ::.:::.:::: :. :: :... . :.. gi|114 MAQRYDDLPHYGGM-DGVGIPSTMYGDPHA 10 20 100 110 120 130 140 bm0991 V----PAVPGPYGP----HRPPQP-----LPPGLDS---DGLKREKDEIYGHPLFPLLAL . :. .:: :. :. . :.. : :.:::.:: :::::::::::: gi|114 ARSMQPVHHLNHGPPLHSHQYPHTAHTNAMAPSMGSSVNDALKRDKDAIYGHPLFPLLAL 30 40 50 60 70 80 150 160 170 180 190 200 bm0991 VFEKCELATCSPRDGAGAGLGTPPGGDVCSSDSFNEDIAAFAKQVRSERPLFSSNPELDN .:::::::::.::. . :: ::::::.:::::::.::::.:.:.::::::::::: gi|114 IFEKCELATCTPREPGVAG------GDVCSSESFNEDIAVFAKQIRAEKPLFSSNPELDN 90 100 110 120 130 140 210 220 230 240 250 260 bm0991 LMIQAIQVLRFHLLELEKGKMPIDLVIEDRDGGCREDFEDYPASCPSLPDQNNMWIRDHE :::::::::::::::::::::::::::.::.:: . : :: : .: ::: : :::. gi|114 LMIQAIQVLRFHLLELEKGKMPIDLVIDDREGGSKSDSEDITRSA-NLTDQNPSWNRDHD 150 160 170 180 190 200 270 280 290 300 310 320 bm0991 DSGSVHLG-TPGPSSGGLASQSGDNSSDQGDGLDTSVASPSSGGEDEDLDQERRRNKKRG :..:.. : :::::::: .:.::::::.::::::.::::::.: .:.: :....:.:::: gi|114 DTASTRSGGTPGPSSGGHTSHSGDNSSEQGDGLDNSVASPSTG-DDDDPDKDKKRHKKRG 210 220 230 240 250 260 330 340 350 360 370 380 bm0991 IFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQ ::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::: gi|114 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQ 270 280 290 300 310 320 390 400 410 420 430 bm0991 SNRT-GQGAAFSPEGQPIGGYT-ETQPHVAVRPPGSVGMSLNLEGEWHYL :::. .::. ..:.:::.::.. . : :...: :: .: gi|114 SNRAVSQGTPYNPDGQPMGGFVMDGQQHMGIRAPGLQSMPGEYVARGGPMGVSMGQPSYT 330 340 350 360 370 380 gi|114 QPQMPPHPAQLRHGPPMHTYIPGHPHHPTVMMHGGPPHPGMPMSASSPTVLNTGDPTMSG 390 400 410 420 430 440 >>gi|62088490|dbj|BAD92692.1| Homeobox protein Meis3 var (250 aa) initn: 1467 init1: 1467 opt: 1467 Z-score: 1441.1 bits: 274.9 E(): 1.7e-71 Smith-Waterman score: 1467; 100.000% identity (100.000% similar) in 210 aa overlap (221-430:41-250) 200 210 220 230 240 250 bm0991 ERPLFSSNPELDNLMIQAIQVLRFHLLELEKGKMPIDLVIEDRDGGCREDFEDYPASCPS :::::::::::::::::::::::::::::: gi|620 PPWVAPPSTPVPPQVHDLCDNFCHRYITCLKGKMPIDLVIEDRDGGCREDFEDYPASCPS 20 30 40 50 60 70 260 270 280 290 300 310 bm0991 LPDQNNMWIRDHEDSGSVHLGTPGPSSGGLASQSGDNSSDQGDGLDTSVASPSSGGEDED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 LPDQNNMWIRDHEDSGSVHLGTPGPSSGGLASQSGDNSSDQGDGLDTSVASPSSGGEDED 80 90 100 110 120 130 320 330 340 350 360 370 bm0991 LDQERRRNKKRGIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFIN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 LDQERRRNKKRGIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFIN 140 150 160 170 180 190 380 390 400 410 420 430 bm0991 ARRRIVQPMIDQSNRTGQGAAFSPEGQPIGGYTETQPHVAVRPPGSVGMSLNLEGEWHYL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 ARRRIVQPMIDQSNRTGQGAAFSPEGQPIGGYTETQPHVAVRPPGSVGMSLNLEGEWHYL 200 210 220 230 240 250 430 residues in 1 query sequences 3071326396 residues in 8985982 library sequences Tcomplib [34.26] (8 proc) start: Thu Jun 18 02:15:49 2009 done: Thu Jun 18 02:18:59 2009 Total Scan time: 1105.510 Total Display time: 0.090 Function used was FASTA [version 34.26.5 April 26, 2007]