hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-02190044/chunk_1/iprscan-20090618-02190044.nocrc
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Query sequence: bm09917
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00046.19.ls Homeobox domain                                 11.5    0.00029   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00046.19.ls   1/1     318   377 ..     1    57 []    11.5  0.00029

Alignments of top-scoring domains:
PF00046.19.ls: domain 1 of 1, from 318 to 377: score 11.5, E = 0.00029
                   *->rrkRTtftpeQleeLEk.eFqk..nrYPsreeReeLAkkLgLterqV
                       +kR +f +  ++++ + +Fq  +++YPs e+ ++LA+ +gLt  qV
     bm09917   318    NKKRGIFPKVATNIMRAwLFQHlsHPYPSEEQKKQLAQDTGLTILQV 364  

                   kvWFQNRRaKwKk<-*
                    +WF N R +  +   
     bm09917   365 NNWFINARRRIVQ    377  

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