hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-02314135/chunk_1/iprscan-20090618-02314135.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bm11029 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 279.9 4.5e-81 8 PF00096.16.fs Zinc finger, C2H2 type 266.3 5.8e-77 9 PF01352.17.fs KRAB box 92.2 1.4e-25 1 PF01352.17.ls KRAB box 94.2 3.6e-25 1 PF01096.9.fs Transcription factor S-II (TFIIS) 37.7 5.9e-11 6 PF01286.9.fs XPA protein N-terminal 32.2 2.1e-08 8 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01352.17.fs 1/1 99 139 .. 1 41 [] 92.2 1.4e-25 PF01352.17.ls 1/1 99 139 .. 1 41 [] 94.2 3.6e-25 PF00096.16.ls 1/8 248 270 .. 1 24 [] 32.5 1.4e-06 PF00096.16.fs 2/9 248 270 .. 1 24 [] 30.5 2.3e-06 PF00096.16.ls 2/8 276 298 .. 1 24 [] 39.4 1.2e-08 PF00096.16.fs 3/9 276 298 .. 1 24 [] 37.4 4.6e-08 PF00096.16.ls 3/8 304 326 .. 1 24 [] 29.1 1.4e-05 PF00096.16.fs 4/9 304 326 .. 1 24 [] 27.2 1.6e-05 PF00096.16.ls 4/8 332 354 .. 1 24 [] 37.5 4.1e-08 PF00096.16.fs 5/9 332 354 .. 1 24 [] 35.6 1.3e-07 PF00096.16.fs 6/9 360 382 .. 1 24 [] 36.2 9.1e-08 PF00096.16.ls 5/8 360 382 .. 1 24 [] 38.1 2.7e-08 PF00096.16.fs 7/9 388 410 .. 1 24 [] 36.0 1e-07 PF00096.16.ls 6/8 388 410 .. 1 24 [] 38.0 3.1e-08 PF00096.16.fs 8/9 416 438 .. 1 24 [] 25.3 4.7e-05 PF00096.16.ls 7/8 416 438 .. 1 24 [] 27.3 5.2e-05 PF00096.16.fs 9/9 444 466 .. 1 24 [] 36.0 9.9e-08 PF00096.16.ls 8/8 444 466 .. 1 24 [] 38.0 3e-08 Alignments of top-scoring domains: PF01352.17.fs: domain 1 of 1, from 99 to 139: score 92.2, E = 1.4e-25 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* VtFeDVaV+F ++EW++L+paQr+LYrdVMlENy+n++Sl+ bm11029 99 VTFEDVAVYFIRKEWKRLEPAQRDLYRDVMLENYGNVFSLD 139 PF01352.17.ls: domain 1 of 1, from 99 to 139: score 94.2, E = 3.6e-25 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* VtFeDVaV+F ++EW++L+paQr+LYrdVMlENy+n++Sl+ bm11029 99 VTFEDVAVYFIRKEWKRLEPAQRDLYRDVMLENYGNVFSLD 139 PF00096.16.ls: domain 1 of 8, from 248 to 270: score 32.5, E = 1.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +C ksF+r s+L +H+r+H bm11029 248 HKCD-ECSKSFNRTSDLIQHQRIH 270 PF00096.16.fs: domain 2 of 9, from 248 to 270: score 30.5, E = 2.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +C ksF+r s+L +H+r+H bm11029 248 HKCD-ECSKSFNRTSDLIQHQRIH 270 PF00096.16.ls: domain 2 of 8, from 276 to 298: score 39.4, E = 1.2e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs++s+L +H+r+H bm11029 276 YECN-ECGKAFSQSSHLIQHQRIH 298 PF00096.16.fs: domain 3 of 9, from 276 to 298: score 37.4, E = 4.6e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs++s+L +H+r+H bm11029 276 YECN-ECGKAFSQSSHLIQHQRIH 298 PF00096.16.ls: domain 3 of 8, from 304 to 326: score 29.1, E = 1.4e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dCgk+Fs +s L H+r+H bm11029 304 YECS-DCGKTFSCSSALILHRRIH 326 PF00096.16.fs: domain 4 of 9, from 304 to 326: score 27.2, E = 1.6e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dCgk+Fs +s L H+r+H bm11029 304 YECS-DCGKTFSCSSALILHRRIH 326 PF00096.16.ls: domain 4 of 8, from 332 to 354: score 37.5, E = 4.1e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs +s+L++H+r+H bm11029 332 YECN-ECGKTFSWSSTLTHHQRIH 354 PF00096.16.fs: domain 5 of 9, from 332 to 354: score 35.6, E = 1.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs +s+L++H+r+H bm11029 332 YECN-ECGKTFSWSSTLTHHQRIH 354 PF00096.16.fs: domain 6 of 9, from 360 to 382: score 36.2, E = 9.1e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+Fsr+s+L +H+r+H bm11029 360 YACN-ECGKAFSRSSTLIHHQRIH 382 PF00096.16.ls: domain 5 of 8, from 360 to 382: score 38.1, E = 2.7e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+Fsr+s+L +H+r+H bm11029 360 YACN-ECGKAFSRSSTLIHHQRIH 382 PF00096.16.fs: domain 7 of 9, from 388 to 410: score 36.0, E = 1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs++s+L +H+r+H bm11029 388 YECN-ECGKAFSQSSHLYQHQRIH 410 PF00096.16.ls: domain 6 of 8, from 388 to 410: score 38.0, E = 3.1e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs++s+L +H+r+H bm11029 388 YECN-ECGKAFSQSSHLYQHQRIH 410 PF00096.16.fs: domain 8 of 9, from 416 to 438: score 25.3, E = 4.7e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cg +F+ +s L +H+r+H bm11029 416 YECM-ECGGKFTYSSGLIQHQRIH 438 PF00096.16.ls: domain 7 of 8, from 416 to 438: score 27.3, E = 5.2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cg +F+ +s L +H+r+H bm11029 416 YECM-ECGGKFTYSSGLIQHQRIH 438 PF00096.16.fs: domain 9 of 9, from 444 to 466: score 36.0, E = 9.9e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ +s L rH+r+H bm11029 444 YECS-ECGKAFRYSSALVRHQRIH 466 PF00096.16.ls: domain 8 of 8, from 444 to 466: score 38.0, E = 3e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ +s L rH+r+H bm11029 444 YECS-ECGKAFRYSSALVRHQRIH 466 //