hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-02314135/chunk_1/iprscan-20090618-02314135.nocrc
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Query sequence: bm11029
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 230.8    1.1e-64   8
SM00349                                                  87.2    1.9e-21   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00349      1/1      99   154 ..     1    62 []    87.2  1.9e-21
SM00355      1/8     248   270 ..     1    23 []    28.4    0.001
SM00355      2/8     276   298 ..     1    23 []    30.7   0.0002
SM00355      3/8     304   326 ..     1    23 []    27.4    0.002
SM00355      4/8     332   354 ..     1    23 []    30.4  0.00025
SM00355      5/8     360   382 ..     1    23 []    29.0  0.00064
SM00355      6/8     388   410 ..     1    23 []    29.0  0.00066
SM00355      7/8     416   438 ..     1    23 []    24.5    0.015
SM00355      8/8     444   466 ..     1    23 []    31.4  0.00013

Alignments of top-scoring domains:
SM00349: domain 1 of 1, from 99 to 154: score 87.2, E = 1.9e-21
                   *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk
                      VtFeDVAV+F ++EW+ L+paQr+LYRdVMlENY+n++SL+  ++  
     bm11029    99    VTFEDVAVYFIRKEWKRLEPAQRDLYRDVMLENYGNVFSLD-RETR- 143  

                   pdliskLEqgeEpwi<-*
                       +   q+    +   
     bm11029   144 ----TENDQEISEDT    154  

SM00355: domain 1 of 8, from 248 to 270: score 28.4, E = 0.001
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC++ C+ksf++ ++L++H+r+H   
     bm11029   248    HKCDE-CSKSFNRTsDLIQHQRIH    270  

SM00355: domain 2 of 8, from 276 to 298: score 30.7, E = 0.0002
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk fs+ ++L++H+r+H   
     bm11029   276    YECNE-CGKAFSQSsHLIQHQRIH    298  

SM00355: domain 3 of 8, from 304 to 326: score 27.4, E = 0.002
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C+  Cgk+fs  +aL+ H r+H   
     bm11029   304    YECSD-CGKTFSCSsALILHRRIH    326  

SM00355: domain 4 of 8, from 332 to 354: score 30.4, E = 0.00025
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk+fs+ + L++H+r+H   
     bm11029   332    YECNE-CGKTFSWSsTLTHHQRIH    354  

SM00355: domain 5 of 8, from 360 to 382: score 29.0, E = 0.00064
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ Cgk fs+ + L++H+r+H   
     bm11029   360    YACNE-CGKAFSRSsTLIHHQRIH    382  

SM00355: domain 6 of 8, from 388 to 410: score 29.0, E = 0.00066
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk fs+ ++L +H+r+H   
     bm11029   388    YECNE-CGKAFSQSsHLYQHQRIH    410  

SM00355: domain 7 of 8, from 416 to 438: score 24.5, E = 0.015
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C + Cg +f+  + L++H+r+H   
     bm11029   416    YECME-CGGKFTYSsGLIQHQRIH    438  

SM00355: domain 8 of 8, from 444 to 466: score 31.4, E = 0.00013
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f+  +aL+rH+r+H   
     bm11029   444    YECSE-CGKAFRYSsALVRHQRIH    466  

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