hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090525/iprscan-20090525-12471973/chunk_1/iprscan-20090525-12471973.nocrc
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Query sequence: bn02167
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01284.13.fs Membrane-associating domain                    134.7    9.8e-39   1
PF01284.13.ls Membrane-associating domain                    136.3    7.7e-38   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01284.13.fs   1/1      30   163 ..     1   197 []   134.7  9.8e-39
PF01284.13.ls   1/1      30   163 ..     1   197 []   136.3  7.7e-38

Alignments of top-scoring domains:
PF01284.13.fs: domain 1 of 1, from 30 to 163: score 134.7, E = 9.8e-39
                   *->flrtplGilkilelvlgllvficissyggtlaleygclsgegynggf
                      +++t++ +l+i+e+++g+lv+i++                       
     bn02167    30    VFTTLPDLLFIFEFIFGGLVWILV----------------------- 53   

                   ggpfrldgqasllydnssaagffmavavfaFlitlafLllylfflhrtip
                            as+l++++  +g++m+v+vf+F++t+ +++ly+++ h   +
     bn02167    54 ---------ASSLVPWPLVQGWVMFVSVFCFVATTTLIILYIIGAHGGET 94   

                   drirwplldlifsllaallyliasivlasalsdskgagtpsgsgelaasg
                      +w+ ld +++++aal+yl+as+++a a+  +  + t ++++e+    
     bn02167    95 ---SWVTLDAAYHCTAALFYLSASVLEALATITMQDGFTYRHYHEN---- 137  

                   lsgqncsfvsrddvnqylHYCVPQaaAivFgflatllyaldavlafkryr
                                           +aA+vF+++atlly+++av+++ r++
     bn02167   138 ------------------------IAAVVFSYIATLLYVVHAVFSLIRWK 163  

                   <-*
                      
     bn02167     -     -    

PF01284.13.ls: domain 1 of 1, from 30 to 163: score 136.3, E = 7.7e-38
                   *->flrtplGilkilelvlgllvficissyggtlaleygclsgegynggf
                      +++t++ +l+i+e+++g+lv+i++                       
     bn02167    30    VFTTLPDLLFIFEFIFGGLVWILV----------------------- 53   

                   ggpfrldgqasllydnssaagffmavavfaFlitlafLllylfflhrtip
                            as+l++++  +g++m+v+vf+F++t+ +++ly+++ h   +
     bn02167    54 ---------ASSLVPWPLVQGWVMFVSVFCFVATTTLIILYIIGAHGGET 94   

                   drirwplldlifsllaallyliasivlasalsdskgagtpsgsgelaasg
                      +w+ ld +++++aal+yl+as+++a a+  +  + t ++++e+    
     bn02167    95 ---SWVTLDAAYHCTAALFYLSASVLEALATITMQDGFTYRHYHEN---- 137  

                   lsgqncsfvsrddvnqylHYCVPQaaAivFgflatllyaldavlafkryr
                                           +aA+vF+++atlly+++av+++ r++
     bn02167   138 ------------------------IAAVVFSYIATLLYVVHAVFSLIRWK 163  

                   <-*
                      
     bn02167     -     -    

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