# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Obn02188.fasta.nr -Q bn02188.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 bn02188, 147 aa vs /cdna2/lib/nr/nr library 2779448989 residues in 8089198 sequences statistics sampled from 60000 to 8088703 sequences Expectation_n fit: rho(ln(x))= 5.3803+/-0.000182; mu= 5.5627+/- 0.010 mean_var=77.7738+/-14.938, 0's: 42 Z-trim: 45 B-trim: 0 in 0/64 Lambda= 0.145431 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(8089198) gi|73992122|ref|XP_534380.2| PREDICTED: similar to ( 163) 860 188.9 2.6e-46 gi|24211602|sp|Q9NUG6.2|PDRG1_HUMAN RecName: Full= ( 133) 852 187.2 7.2e-46 gi|75042624|sp|Q5RFA9.1|PDRG1_PONAB RecName: Full= ( 133) 846 185.9 1.7e-45 gi|194224287|ref|XP_001498397.2| PREDICTED: simila ( 133) 841 184.9 3.6e-45 gi|38197489|gb|AAH01856.2| PDRG1 protein [Homo sap ( 129) 825 181.5 3.6e-44 gi|116248570|sp|Q148L7.1|PDRG1_BOVIN RecName: Full ( 133) 824 181.3 4.2e-44 gi|24211568|sp|P59048.1|PDRG1_MOUSE RecName: Full= ( 133) 795 175.2 2.9e-42 gi|116248571|sp|Q642A0.2|PDRG1_RAT RecName: Full=p ( 133) 771 170.2 9.4e-41 gi|148674059|gb|EDL06006.1| p53 and DNA damage reg ( 127) 744 164.5 4.6e-39 gi|109092430|ref|XP_001109089.1| PREDICTED: simila ( 113) 685 152.1 2.2e-35 gi|126293855|ref|XP_001362684.1| PREDICTED: simila ( 133) 685 152.1 2.5e-35 gi|148674063|gb|EDL06010.1| p53 and DNA damage reg ( 131) 633 141.2 4.8e-32 gi|118100771|ref|XP_001235076.1| PREDICTED: simila ( 221) 547 123.3 2e-26 gi|197127686|gb|ACH44184.1| putative p53 and DNA d ( 132) 544 122.5 2e-26 gi|119596806|gb|EAW76400.1| p53 and DNA damage reg ( 76) 505 114.2 3.8e-24 gi|57870496|gb|AAH89082.1| Similar to dJ310O13.3 ( ( 134) 496 112.5 2.2e-23 gi|62203413|gb|AAH93358.1| Zgc:112519 [Danio rerio ( 131) 491 111.4 4.5e-23 gi|148674061|gb|EDL06008.1| p53 and DNA damage reg ( 135) 471 107.2 8.5e-22 gi|210121626|gb|EEA69337.1| hypothetical protein B ( 125) 407 93.8 8.8e-18 gi|210126819|gb|EEA74504.1| hypothetical protein B ( 131) 404 93.2 1.4e-17 gi|215504392|gb|EEC13886.1| p53 and DNA damage-reg ( 132) 404 93.2 1.4e-17 gi|156216093|gb|EDO37037.1| predicted protein [Nem ( 135) 376 87.3 8.5e-16 gi|198435956|ref|XP_002131860.1| PREDICTED: simila ( 132) 358 83.5 1.1e-14 gi|109092432|ref|XP_001109142.1| PREDICTED: simila ( 108) 352 82.2 2.3e-14 gi|148674060|gb|EDL06007.1| p53 and DNA damage reg ( 111) 323 76.1 1.6e-12 gi|149030997|gb|EDL86024.1| p53 and DNA damage reg ( 108) 321 75.7 2.1e-12 gi|110749826|ref|XP_001120239.1| PREDICTED: simila ( 134) 318 75.1 3.9e-12 gi|212512809|gb|EEB15510.1| p53 and DNA damage-reg ( 130) 310 73.4 1.2e-11 gi|156544668|ref|XP_001605143.1| PREDICTED: simila ( 131) 304 72.2 2.9e-11 gi|221128795|ref|XP_002160943.1| PREDICTED: simila ( 128) 299 71.1 5.9e-11 gi|47183672|emb|CAF96069.1| unnamed protein produc ( 94) 294 70.0 9.6e-11 gi|221118650|ref|XP_002160753.1| PREDICTED: simila ( 128) 295 70.3 1.1e-10 gi|224078204|ref|XP_002192969.1| PREDICTED: putati ( 168) 290 69.3 2.7e-10 gi|194159824|gb|EDW74725.1| GK15830 [Drosophila wi ( 135) 288 68.8 3.1e-10 gi|167868728|gb|EDS32111.1| conserved hypothetical ( 136) 276 66.3 1.8e-09 gi|91085929|ref|XP_970135.1| PREDICTED: similar to ( 135) 269 64.8 4.8e-09 gi|54636407|gb|EAL25810.1| GA13989 [Drosophila pse ( 131) 268 64.6 5.5e-09 gi|190622140|gb|EDV37664.1| GF11299 [Drosophila an ( 132) 268 64.6 5.5e-09 gi|194114232|gb|EDW36275.1| GL17705 [Drosophila pe ( 131) 265 64.0 8.5e-09 gi|56758692|gb|AAW27486.1| SJCHGC05764 protein [Sc ( 126) 260 62.9 1.7e-08 gi|193603410|ref|XP_001950519.1| PREDICTED: simila ( 126) 257 62.3 2.6e-08 gi|108872101|gb|EAT36326.1| conserved hypothetical ( 134) 257 62.3 2.8e-08 gi|193902936|gb|EDW01803.1| GH21640 [Drosophila gr ( 132) 253 61.5 4.9e-08 gi|194145844|gb|EDW62240.1| GJ19860 [Drosophila vi ( 132) 251 61.1 6.5e-08 gi|194125138|gb|EDW47181.1| GM20565 [Drosophila se ( 132) 242 59.2 2.4e-07 gi|27374248|gb|AAO01007.1| CG15863-PA [Drosophila ( 132) 241 59.0 2.8e-07 gi|7303824|gb|AAF58871.1| CG15863 [Drosophila mela ( 132) 240 58.8 3.2e-07 gi|190660990|gb|EDV58182.1| GG25244 [Drosophila er ( 132) 236 57.9 5.8e-07 gi|193909829|gb|EDW08696.1| GI20093 [Drosophila mo ( 132) 235 57.7 6.7e-07 gi|194192849|gb|EDX06425.1| GD10036 [Drosophila si ( 132) 235 57.7 6.7e-07 >>gi|73992122|ref|XP_534380.2| PREDICTED: similar to p53 (163 aa) initn: 855 init1: 855 opt: 860 Z-score: 987.8 bits: 188.9 E(): 2.6e-46 Smith-Waterman score: 860; 91.837% identity (95.918% similar) in 147 aa overlap (4-147:17-163) 10 20 30 40 bn0218 PGVAREP---QAELVGAMLSPEAERVLRYLVEVEELAEEVLADKRQI :: : ..::.: ::::::::::::::::::::: :::::::: gi|739 MPGKLSEAEPYRRWSWARSPVRAESELAGPMLSPEAERVLRYLVEVEELAEAVLADKRQI 10 20 30 40 50 60 50 60 70 80 90 100 bn0218 VDLDTKRNQNREGLRALQKDLSLSEDVMVCFGNMFIKMPHPETKEMIEKDQDHLDKEIEK :::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::: gi|739 VDLDTKRNQNREGLRALQKDLSLSEDVMVCFGNMFIKMPHPQTKEMIEKDQDHLDKEIEK 70 80 90 100 110 120 110 120 130 140 bn0218 LRKQLKVKVNRLFEAQGKPELKGFNLNPLNQDELKALKVILKG ::::::::::::::::::::::::::.:::::::::::.:::: gi|739 LRKQLKVKVNRLFEAQGKPELKGFNLSPLNQDELKALKIILKG 130 140 150 160 >>gi|24211602|sp|Q9NUG6.2|PDRG1_HUMAN RecName: Full=p53 (133 aa) initn: 852 init1: 852 opt: 852 Z-score: 980.0 bits: 187.2 E(): 7.2e-46 Smith-Waterman score: 852; 100.000% identity (100.000% similar) in 133 aa overlap (15-147:1-133) 10 20 30 40 50 60 bn0218 PGVAREPQAELVGAMLSPEAERVLRYLVEVEELAEEVLADKRQIVDLDTKRNQNREGLRA :::::::::::::::::::::::::::::::::::::::::::::: gi|242 MLSPEAERVLRYLVEVEELAEEVLADKRQIVDLDTKRNQNREGLRA 10 20 30 40 70 80 90 100 110 120 bn0218 LQKDLSLSEDVMVCFGNMFIKMPHPETKEMIEKDQDHLDKEIEKLRKQLKVKVNRLFEAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|242 LQKDLSLSEDVMVCFGNMFIKMPHPETKEMIEKDQDHLDKEIEKLRKQLKVKVNRLFEAQ 50 60 70 80 90 100 130 140 bn0218 GKPELKGFNLNPLNQDELKALKVILKG ::::::::::::::::::::::::::: gi|242 GKPELKGFNLNPLNQDELKALKVILKG 110 120 130 >>gi|75042624|sp|Q5RFA9.1|PDRG1_PONAB RecName: Full=p53 (133 aa) initn: 846 init1: 846 opt: 846 Z-score: 973.2 bits: 185.9 E(): 1.7e-45 Smith-Waterman score: 846; 98.496% identity (100.000% similar) in 133 aa overlap (15-147:1-133) 10 20 30 40 50 60 bn0218 PGVAREPQAELVGAMLSPEAERVLRYLVEVEELAEEVLADKRQIVDLDTKRNQNREGLRA :::::::::::::::::::::::::::::::::::::::::::::: gi|750 MLSPEAERVLRYLVEVEELAEEVLADKRQIVDLDTKRNQNREGLRA 10 20 30 40 70 80 90 100 110 120 bn0218 LQKDLSLSEDVMVCFGNMFIKMPHPETKEMIEKDQDHLDKEIEKLRKQLKVKVNRLFEAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: gi|750 LQKDLSLSEDVMVCFGNMFIKMPHPETKEMIEKDQDHLDKEIEKLRKQLKVKVDRLFEAQ 50 60 70 80 90 100 130 140 bn0218 GKPELKGFNLNPLNQDELKALKVILKG ::::::::::::::::::::::.:::: gi|750 GKPELKGFNLNPLNQDELKALKIILKG 110 120 130 >>gi|194224287|ref|XP_001498397.2| PREDICTED: similar to (133 aa) initn: 841 init1: 841 opt: 841 Z-score: 967.5 bits: 184.9 E(): 3.6e-45 Smith-Waterman score: 841; 97.744% identity (100.000% similar) in 133 aa overlap (15-147:1-133) 10 20 30 40 50 60 bn0218 PGVAREPQAELVGAMLSPEAERVLRYLVEVEELAEEVLADKRQIVDLDTKRNQNREGLRA ::::::::::.::::::::::::::::::::::::::::::::::: gi|194 MLSPEAERVLQYLVEVEELAEEVLADKRQIVDLDTKRNQNREGLRA 10 20 30 40 70 80 90 100 110 120 bn0218 LQKDLSLSEDVMVCFGNMFIKMPHPETKEMIEKDQDHLDKEIEKLRKQLKVKVNRLFEAQ :::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::: gi|194 LQKDLSLSEDVMVCFGNMFIKMPHPQTKEMIEKDQDHLDKEIEKLRKQLKVKVNRLFEAQ 50 60 70 80 90 100 130 140 bn0218 GKPELKGFNLNPLNQDELKALKVILKG ::::::::::::::::::::::.:::: gi|194 GKPELKGFNLNPLNQDELKALKIILKG 110 120 130 >>gi|38197489|gb|AAH01856.2| PDRG1 protein [Homo sapiens (129 aa) initn: 825 init1: 825 opt: 825 Z-score: 949.5 bits: 181.5 E(): 3.6e-44 Smith-Waterman score: 825; 100.000% identity (100.000% similar) in 129 aa overlap (19-147:1-129) 10 20 30 40 50 60 bn0218 PGVAREPQAELVGAMLSPEAERVLRYLVEVEELAEEVLADKRQIVDLDTKRNQNREGLRA :::::::::::::::::::::::::::::::::::::::::: gi|381 EAERVLRYLVEVEELAEEVLADKRQIVDLDTKRNQNREGLRA 10 20 30 40 70 80 90 100 110 120 bn0218 LQKDLSLSEDVMVCFGNMFIKMPHPETKEMIEKDQDHLDKEIEKLRKQLKVKVNRLFEAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|381 LQKDLSLSEDVMVCFGNMFIKMPHPETKEMIEKDQDHLDKEIEKLRKQLKVKVNRLFEAQ 50 60 70 80 90 100 130 140 bn0218 GKPELKGFNLNPLNQDELKALKVILKG ::::::::::::::::::::::::::: gi|381 GKPELKGFNLNPLNQDELKALKVILKG 110 120 >>gi|116248570|sp|Q148L7.1|PDRG1_BOVIN RecName: Full=p53 (133 aa) initn: 824 init1: 824 opt: 824 Z-score: 948.2 bits: 181.3 E(): 4.2e-44 Smith-Waterman score: 824; 95.489% identity (100.000% similar) in 133 aa overlap (15-147:1-133) 10 20 30 40 50 60 bn0218 PGVAREPQAELVGAMLSPEAERVLRYLVEVEELAEEVLADKRQIVDLDTKRNQNREGLRA ::::::::::::::::::::::::::::::::::::::.::::::: gi|116 MLSPEAERVLRYLVEVEELAEEVLADKRQIVDLDTKRNRNREGLRA 10 20 30 40 70 80 90 100 110 120 bn0218 LQKDLSLSEDVMVCFGNMFIKMPHPETKEMIEKDQDHLDKEIEKLRKQLKVKVNRLFEAQ :::::::.::::::::::::.::::::::::::::.:::::::.:::::::::::::::: gi|116 LQKDLSLTEDVMVCFGNMFIRMPHPETKEMIEKDQEHLDKEIERLRKQLKVKVNRLFEAQ 50 60 70 80 90 100 130 140 bn0218 GKPELKGFNLNPLNQDELKALKVILKG ::::::::::.:::::::::::::::: gi|116 GKPELKGFNLTPLNQDELKALKVILKG 110 120 130 >>gi|24211568|sp|P59048.1|PDRG1_MOUSE RecName: Full=p53 (133 aa) initn: 795 init1: 795 opt: 795 Z-score: 915.3 bits: 175.2 E(): 2.9e-42 Smith-Waterman score: 795; 91.729% identity (98.496% similar) in 133 aa overlap (15-147:1-133) 10 20 30 40 50 60 bn0218 PGVAREPQAELVGAMLSPEAERVLRYLVEVEELAEEVLADKRQIVDLDTKRNQNREGLRA ::::::::::::::::::::: ::.::::::::::::::::::::: gi|242 MLSPEAERVLRYLVEVEELAEAVLSDKRQIVDLDTKRNQNREGLRA 10 20 30 40 70 80 90 100 110 120 bn0218 LQKDLSLSEDVMVCFGNMFIKMPHPETKEMIEKDQDHLDKEIEKLRKQLKVKVNRLFEAQ ::::::.::::::::::::::::::.:::::.:::.:::::::.::.::::::::::::: gi|242 LQKDLSVSEDVMVCFGNMFIKMPHPKTKEMIQKDQEHLDKEIERLRSQLKVKVNRLFEAQ 50 60 70 80 90 100 130 140 bn0218 GKPELKGFNLNPLNQDELKALKVILKG :::::::::::::. ::.::::::::: gi|242 GKPELKGFNLNPLSPDEVKALKVILKG 110 120 130 >>gi|116248571|sp|Q642A0.2|PDRG1_RAT RecName: Full=p53 a (133 aa) initn: 771 init1: 771 opt: 771 Z-score: 888.1 bits: 170.2 E(): 9.4e-41 Smith-Waterman score: 771; 89.474% identity (97.744% similar) in 133 aa overlap (15-147:1-133) 10 20 30 40 50 60 bn0218 PGVAREPQAELVGAMLSPEAERVLRYLVEVEELAEEVLADKRQIVDLDTKRNQNREGLRA :.::::.:::::::::::::: ::.::::::::::::::::::::: gi|116 MVSPEADRVLRYLVEVEELAEAVLSDKRQIVDLDTKRNQNREGLRA 10 20 30 40 70 80 90 100 110 120 bn0218 LQKDLSLSEDVMVCFGNMFIKMPHPETKEMIEKDQDHLDKEIEKLRKQLKVKVNRLFEAQ :::: :.::::::::::::::::: .:::::.:::.:::::::.::.:::::::::.::: gi|116 LQKDPSVSEDVMVCFGNMFIKMPHLKTKEMIQKDQEHLDKEIERLRSQLKVKVNRLLEAQ 50 60 70 80 90 100 130 140 bn0218 GKPELKGFNLNPLNQDELKALKVILKG :::::::::::::::::::::.::::: gi|116 GKPELKGFNLNPLNQDELKALQVILKG 110 120 130 >>gi|148674059|gb|EDL06006.1| p53 and DNA damage regulat (127 aa) initn: 744 init1: 476 opt: 744 Z-score: 857.8 bits: 164.5 E(): 4.6e-39 Smith-Waterman score: 744; 90.625% identity (97.656% similar) in 128 aa overlap (20-147:1-127) 10 20 30 40 50 60 bn0218 PGVAREPQAELVGAMLSPEAERVLRYLVEVEELAEEVLADKRQIVDLDTKRNQNREGLRA :::::::::::::::: ::.::::::::::::::::::::: gi|148 AERVLRYLVEVEELAEAVLSDKRQIVDLDTKRNQNREGLRA 10 20 30 40 70 80 90 100 110 120 bn0218 LQKDLSLSEDVMVCFGNMFIKMPHPETKEMIEKDQDHLDKEIEKLRKQLKVKVNRLFEAQ ::::::.: ::::::::::::::::.:::::.:::.:::::::.::.::::::::::::: gi|148 LQKDLSVS-DVMVCFGNMFIKMPHPKTKEMIQKDQEHLDKEIERLRSQLKVKVNRLFEAQ 50 60 70 80 90 100 130 140 bn0218 GKPELKGFNLNPLNQDELKALKVILKG :::::::::::::. ::.::::::::: gi|148 GKPELKGFNLNPLSPDEVKALKVILKG 110 120 >>gi|109092430|ref|XP_001109089.1| PREDICTED: similar to (113 aa) initn: 685 init1: 685 opt: 685 Z-score: 791.6 bits: 152.1 E(): 2.2e-35 Smith-Waterman score: 685; 100.000% identity (100.000% similar) in 107 aa overlap (15-121:1-107) 10 20 30 40 50 60 bn0218 PGVAREPQAELVGAMLSPEAERVLRYLVEVEELAEEVLADKRQIVDLDTKRNQNREGLRA :::::::::::::::::::::::::::::::::::::::::::::: gi|109 MLSPEAERVLRYLVEVEELAEEVLADKRQIVDLDTKRNQNREGLRA 10 20 30 40 70 80 90 100 110 120 bn0218 LQKDLSLSEDVMVCFGNMFIKMPHPETKEMIEKDQDHLDKEIEKLRKQLKVKVNRLFEAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 LQKDLSLSEDVMVCFGNMFIKMPHPETKEMIEKDQDHLDKEIEKLRKQLKVKVNRLFEAQ 50 60 70 80 90 100 130 140 bn0218 GKPELKGFNLNPLNQDELKALKVILKG : gi|109 GPRNRLG 110 147 residues in 1 query sequences 2779448989 residues in 8089198 library sequences Tcomplib [34.26] (8 proc) start: Thu Apr 16 12:45:02 2009 done: Thu Apr 16 12:48:33 2009 Total Scan time: 668.490 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]