# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Obn03581.fasta.nr -Q bn03581.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 bn03581, 182 aa vs /cdna2/lib/nr/nr library 3693839240 residues in 10853916 sequences statistics sampled from 60000 to 10853126 sequences Expectation_n fit: rho(ln(x))= 5.1233+/-0.000183; mu= 7.3135+/- 0.010 mean_var=67.3584+/-13.408, 0's: 25 Z-trim: 30 B-trim: 3059 in 1/65 Lambda= 0.156271 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(10853916) gi|136479|sp|P13693.1|TCTP_HUMAN RecName: Full=Tra ( 172) 1137 264.5 8e-69 gi|109156944|pdb|1YZ1|A Chain A, Crystal Structure ( 174) 1137 264.5 8.1e-69 gi|119629138|gb|EAX08733.1| tumor protein, transla ( 177) 1137 264.5 8.2e-69 gi|281349944|gb|EFB25528.1| hypothetical protein P ( 179) 1137 264.5 8.3e-69 gi|114794484|pdb|2HR9|A Chain A, Solution Structur ( 180) 1137 264.5 8.3e-69 gi|55662177|emb|CAH72035.1| tumor protein, transla ( 188) 1137 264.5 8.6e-69 gi|119629139|gb|EAX08734.1| tumor protein, transla ( 197) 1137 264.5 9e-69 gi|62901141|sp|Q5E984.1|TCTP_BOVIN RecName: Full=T ( 172) 1136 264.3 9.4e-69 gi|109019022|ref|XP_001112392.1| PREDICTED: tumor ( 172) 1133 263.6 1.5e-68 gi|33285832|gb|AAQ01550.1| TCTP [Homo sapiens] ( 172) 1132 263.4 1.8e-68 gi|114558620|ref|XP_001146432.1| PREDICTED: simila ( 172) 1132 263.4 1.8e-68 gi|62901902|gb|AAY18902.1| TPT1 [synthetic constru ( 196) 1130 263.0 2.7e-68 gi|242556420|pdb|3EBM|A Chain A, Crystal Structure ( 180) 1128 262.5 3.4e-68 gi|164419299|gb|ABY54903.1| TPT1 [Cavia porcellus] ( 172) 1126 262.0 4.5e-68 gi|15214610|gb|AAH12431.1| Tumor protein, translat ( 172) 1125 261.8 5.2e-68 gi|6175056|sp|P43348.2|TCTP_RABIT RecName: Full=Tr ( 172) 1120 260.7 1.1e-67 gi|109090640|ref|XP_001090279.1| PREDICTED: simila ( 216) 1120 260.7 1.4e-67 gi|109120640|ref|XP_001095869.1| PREDICTED: tumor ( 171) 1118 260.2 1.6e-67 gi|291391755|ref|XP_002712340.1| PREDICTED: tumor ( 172) 1116 259.8 2.1e-67 gi|291393047|ref|XP_002713022.1| PREDICTED: tumor ( 172) 1114 259.3 2.9e-67 gi|194221910|ref|XP_001491354.2| PREDICTED: simila ( 249) 1112 259.0 5.4e-67 gi|119909759|ref|XP_001254327.1| PREDICTED: simila ( 172) 1110 258.4 5.5e-67 gi|51703318|sp|P63029.1|TCTP_RAT RecName: Full=Tra ( 172) 1107 257.7 8.7e-67 gi|74197204|dbj|BAE35146.1| unnamed protein produc ( 172) 1102 256.6 1.9e-66 gi|9663757|emb|CAC01239.1| translationally control ( 172) 1099 255.9 3.1e-66 gi|74191544|dbj|BAE30347.1| unnamed protein produc ( 172) 1099 255.9 3.1e-66 gi|74219695|dbj|BAE29613.1| unnamed protein produc ( 172) 1098 255.7 3.6e-66 gi|74198013|dbj|BAE35188.1| unnamed protein produc ( 172) 1096 255.3 4.9e-66 gi|599942|emb|CAA86826.1| translationally controll ( 172) 1094 254.8 6.7e-66 gi|293343499|ref|XP_002725498.1| PREDICTED: tumor ( 172) 1088 253.5 1.7e-65 gi|126296275|ref|XP_001366417.1| PREDICTED: simila ( 172) 1081 251.9 5.1e-65 gi|148693496|gb|EDL25443.1| mCG49917 [Mus musculus ( 172) 1064 248.1 7.2e-64 gi|197127901|gb|ACH44399.1| putative growth-relate ( 172) 1058 246.7 1.8e-63 gi|1174624|sp|P43347.1|TCTP_CHICK RecName: Full=Tr ( 172) 1056 246.2 2.5e-63 gi|291395065|ref|XP_002713996.1| PREDICTED: tumor ( 172) 1052 245.3 4.7e-63 gi|293342344|ref|XP_001065309.2| PREDICTED: tumor ( 177) 1030 240.4 1.5e-61 gi|147744662|gb|ABQ51198.1| translationally-contro ( 156) 1020 238.1 6.5e-61 gi|62653000|ref|XP_576332.1| PREDICTED: tumor prot ( 172) 1020 238.1 7e-61 gi|126326648|ref|XP_001371197.1| PREDICTED: simila ( 172) 1017 237.5 1.1e-60 gi|28189813|dbj|BAC56521.1| similar to translation ( 155) 1015 237.0 1.4e-60 gi|224043412|ref|XP_002198644.1| PREDICTED: putati ( 160) 995 232.5 3.3e-59 gi|109110442|ref|XP_001097510.1| PREDICTED: tumor ( 172) 987 230.7 1.2e-58 gi|114639004|ref|XP_522088.2| PREDICTED: similar t ( 339) 990 231.6 1.3e-58 gi|224043410|ref|XP_002198648.1| PREDICTED: putati ( 166) 973 227.5 1.1e-57 gi|126296321|ref|XP_001371985.1| PREDICTED: simila ( 209) 949 222.2 5.4e-56 gi|18490879|gb|AAH22436.1| TPT1 protein [Homo sapi ( 138) 913 213.9 1.1e-53 gi|114558632|ref|XP_001146287.1| PREDICTED: simila ( 138) 908 212.8 2.3e-53 gi|169178083|ref|XP_001717302.1| PREDICTED: simila ( 138) 863 202.7 2.7e-50 gi|73989029|ref|XP_856393.1| PREDICTED: similar to ( 133) 862 202.4 3e-50 gi|169181065|ref|XP_001725799.1| PREDICTED: simila ( 138) 857 201.3 6.8e-50 >>gi|136479|sp|P13693.1|TCTP_HUMAN RecName: Full=Transla (172 aa) initn: 1137 init1: 1137 opt: 1137 Z-score: 1394.3 bits: 264.5 E(): 8e-69 Smith-Waterman score: 1137; 100.000% identity (100.000% similar) in 172 aa overlap (11-182:1-172) 10 20 30 40 50 60 bn0358 RRRRLPSVAIMIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGG :::::::::::::::::::::::::::::::::::::::::::::::::: gi|136 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGG 10 20 30 40 50 70 80 90 100 110 120 bn0358 NASAEGPEGEGTESTVITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|136 NASAEGPEGEGTESTVITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPER 60 70 80 90 100 110 130 140 150 160 170 180 bn0358 VKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYREDGVTPYMIFFKDGLEME :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|136 VKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYREDGVTPYMIFFKDGLEME 120 130 140 150 160 170 bn0358 KC :: gi|136 KC >>gi|109156944|pdb|1YZ1|A Chain A, Crystal Structure Of (174 aa) initn: 1137 init1: 1137 opt: 1137 Z-score: 1394.2 bits: 264.5 E(): 8.1e-69 Smith-Waterman score: 1137; 100.000% identity (100.000% similar) in 172 aa overlap (11-182:3-174) 10 20 30 40 50 60 bn0358 RRRRLPSVAIMIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGG :::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 EFMIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGG 10 20 30 40 50 70 80 90 100 110 120 bn0358 NASAEGPEGEGTESTVITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 NASAEGPEGEGTESTVITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPER 60 70 80 90 100 110 130 140 150 160 170 180 bn0358 VKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYREDGVTPYMIFFKDGLEME :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 VKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYREDGVTPYMIFFKDGLEME 120 130 140 150 160 170 bn0358 KC :: gi|109 KC >>gi|119629138|gb|EAX08733.1| tumor protein, translation (177 aa) initn: 1137 init1: 1137 opt: 1137 Z-score: 1394.1 bits: 264.5 E(): 8.2e-69 Smith-Waterman score: 1137; 100.000% identity (100.000% similar) in 172 aa overlap (11-182:1-172) 10 20 30 40 50 60 bn0358 RRRRLPSVAIMIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGG :::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGG 10 20 30 40 50 70 80 90 100 110 120 bn0358 NASAEGPEGEGTESTVITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 NASAEGPEGEGTESTVITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPER 60 70 80 90 100 110 130 140 150 160 170 180 bn0358 VKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYREDGVTPYMIFFKDGLEME :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYREDGVTPYMIFFKDGLEME 120 130 140 150 160 170 bn0358 KC :: gi|119 KCFLLLQ >>gi|281349944|gb|EFB25528.1| hypothetical protein PANDA (179 aa) initn: 1137 init1: 1137 opt: 1137 Z-score: 1394.1 bits: 264.5 E(): 8.3e-69 Smith-Waterman score: 1137; 100.000% identity (100.000% similar) in 172 aa overlap (11-182:1-172) 10 20 30 40 50 60 bn0358 RRRRLPSVAIMIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGG :::::::::::::::::::::::::::::::::::::::::::::::::: gi|281 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGG 10 20 30 40 50 70 80 90 100 110 120 bn0358 NASAEGPEGEGTESTVITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|281 NASAEGPEGEGTESTVITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPER 60 70 80 90 100 110 130 140 150 160 170 180 bn0358 VKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYREDGVTPYMIFFKDGLEME :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|281 VKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYREDGVTPYMIFFKDGLEME 120 130 140 150 160 170 bn0358 KC :: gi|281 KCVSIRKWV >>gi|114794484|pdb|2HR9|A Chain A, Solution Structure Of (180 aa) initn: 1137 init1: 1137 opt: 1137 Z-score: 1394.0 bits: 264.5 E(): 8.3e-69 Smith-Waterman score: 1137; 100.000% identity (100.000% similar) in 172 aa overlap (11-182:1-172) 10 20 30 40 50 60 bn0358 RRRRLPSVAIMIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGG :::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGG 10 20 30 40 50 70 80 90 100 110 120 bn0358 NASAEGPEGEGTESTVITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 NASAEGPEGEGTESTVITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPER 60 70 80 90 100 110 130 140 150 160 170 180 bn0358 VKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYREDGVTPYMIFFKDGLEME :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 VKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYREDGVTPYMIFFKDGLEME 120 130 140 150 160 170 bn0358 KC :: gi|114 KCLEHHHHHH 180 >>gi|55662177|emb|CAH72035.1| tumor protein, translation (188 aa) initn: 1137 init1: 1137 opt: 1137 Z-score: 1393.8 bits: 264.5 E(): 8.6e-69 Smith-Waterman score: 1137; 100.000% identity (100.000% similar) in 172 aa overlap (11-182:1-172) 10 20 30 40 50 60 bn0358 RRRRLPSVAIMIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGG :::::::::::::::::::::::::::::::::::::::::::::::::: gi|556 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGG 10 20 30 40 50 70 80 90 100 110 120 bn0358 NASAEGPEGEGTESTVITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|556 NASAEGPEGEGTESTVITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPER 60 70 80 90 100 110 130 140 150 160 170 180 bn0358 VKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYREDGVTPYMIFFKDGLEME :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|556 VKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYREDGVTPYMIFFKDGLEME 120 130 140 150 160 170 bn0358 KC :: gi|556 KCVSTRKWVKINNVKKTF 180 >>gi|119629139|gb|EAX08734.1| tumor protein, translation (197 aa) initn: 1137 init1: 1137 opt: 1137 Z-score: 1393.5 bits: 264.5 E(): 9e-69 Smith-Waterman score: 1137; 100.000% identity (100.000% similar) in 172 aa overlap (11-182:1-172) 10 20 30 40 50 60 bn0358 RRRRLPSVAIMIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGG :::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGG 10 20 30 40 50 70 80 90 100 110 120 bn0358 NASAEGPEGEGTESTVITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 NASAEGPEGEGTESTVITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPER 60 70 80 90 100 110 130 140 150 160 170 180 bn0358 VKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYREDGVTPYMIFFKDGLEME :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYREDGVTPYMIFFKDGLEME 120 130 140 150 160 170 bn0358 KC :: gi|119 KCDAKERNPCAFCLSLWRPRLNWGIHL 180 190 >>gi|62901141|sp|Q5E984.1|TCTP_BOVIN RecName: Full=Trans (172 aa) initn: 1136 init1: 1136 opt: 1136 Z-score: 1393.1 bits: 264.3 E(): 9.4e-69 Smith-Waterman score: 1136; 99.419% identity (100.000% similar) in 172 aa overlap (11-182:1-172) 10 20 30 40 50 60 bn0358 RRRRLPSVAIMIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGG ::::::::::::::::::::::.::::::::::::::::::::::::::: gi|629 MIIYRDLISHDEMFSDIYKIREVADGLCLEVEGKMVSRTEGNIDDSLIGG 10 20 30 40 50 70 80 90 100 110 120 bn0358 NASAEGPEGEGTESTVITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|629 NASAEGPEGEGTESTVITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPER 60 70 80 90 100 110 130 140 150 160 170 180 bn0358 VKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYREDGVTPYMIFFKDGLEME :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|629 VKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYREDGVTPYMIFFKDGLEME 120 130 140 150 160 170 bn0358 KC :: gi|629 KC >>gi|109019022|ref|XP_001112392.1| PREDICTED: tumor prot (172 aa) initn: 1133 init1: 1133 opt: 1133 Z-score: 1389.4 bits: 263.6 E(): 1.5e-68 Smith-Waterman score: 1133; 99.419% identity (100.000% similar) in 172 aa overlap (11-182:1-172) 10 20 30 40 50 60 bn0358 RRRRLPSVAIMIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGG :::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGG 10 20 30 40 50 70 80 90 100 110 120 bn0358 NASAEGPEGEGTESTVITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPER ::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::: gi|109 NASAEGPEGEGTQSTVITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPER 60 70 80 90 100 110 130 140 150 160 170 180 bn0358 VKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYREDGVTPYMIFFKDGLEME :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 VKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYREDGVTPYMIFFKDGLEME 120 130 140 150 160 170 bn0358 KC :: gi|109 KC >>gi|33285832|gb|AAQ01550.1| TCTP [Homo sapiens] (172 aa) initn: 1132 init1: 1132 opt: 1132 Z-score: 1388.2 bits: 263.4 E(): 1.8e-68 Smith-Waterman score: 1132; 99.419% identity (100.000% similar) in 172 aa overlap (11-182:1-172) 10 20 30 40 50 60 bn0358 RRRRLPSVAIMIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGG :::::::::::::::::::::::::::::::::::::::::::::::::: gi|332 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGG 10 20 30 40 50 70 80 90 100 110 120 bn0358 NASAEGPEGEGTESTVITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|332 NASAEGPEGEGTESTVITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPER 60 70 80 90 100 110 130 140 150 160 170 180 bn0358 VKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYREDGVTPYMIFFKDGLEME :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: gi|332 VKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYREDGVTPYMIFFKDGLKME 120 130 140 150 160 170 bn0358 KC :: gi|332 KC 182 residues in 1 query sequences 3693839240 residues in 10853916 library sequences Tcomplib [34.26] (8 proc) start: Mon Apr 26 11:56:31 2010 done: Mon Apr 26 12:02:58 2010 Total Scan time: 974.100 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]