hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20100426/iprscan-20100426-12025903/chunk_1/iprscan-20100426-12025903.nocrc
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Query sequence: bn03581
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00838.8.fs Translationally controlled tumour protein      373.7     1e-110   1
PF00838.8.ls Translationally controlled tumour protein      375.5   7.5e-110   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00838.8.fs   1/1      11   179 ..     1   180 []   373.7   1e-110
PF00838.8.ls   1/1      11   179 ..     1   180 []   375.5 7.5e-110

Alignments of top-scoring domains:
PF00838.8.fs: domain 1 of 1, from 11 to 179: score 373.7, E = 1e-110
                   *->MliYKDvfsgDELfSDSfpmkklvndlvYEvdGkmVtrke.ggddvl
                      M+iY+D++s DE+fSD++++++++++l++Ev+GkmV r+e+ +dd+l
     bn03581    11    MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEgNIDDSL 57   

                   IGANPSAEGgegDEGveetvervvDiVlnfRLqetnCsfDKksfktYiKg
                   IG+N+SAEG+eg EG+e tv+++vDiV+n++Lqet  sf+K+ +k+YiK+
     bn03581    58 IGGNASAEGPEG-EGTESTVITGVDIVMNHHLQET--SFTKEAYKKYIKD 104  

                   YMKavkakLqeenperAeVslFkkniqgfvKklLakDRFKdyqFFiGEsM
                   YMK++k kL+e  per  V++F++++++++K++La+  FK+yqFFiGE+M
     bn03581   105 YMKSIKGKLEEQRPER--VKPFMTGAAEQIKHILAN--FKNYQFFIGENM 150  

                   npGaeDGmValmnYRDvEdGetPymiffKdGLiE<-*
                   np   DGmVal++YR  EdG+tPymiffKdGL+    
     bn03581   151 NP---DGMVALLDYR--EDGVTPYMIFFKDGLEM    179  

PF00838.8.ls: domain 1 of 1, from 11 to 179: score 375.5, E = 7.5e-110
                   *->MliYKDvfsgDELfSDSfpmkklvndlvYEvdGkmVtrke.ggddvl
                      M+iY+D++s DE+fSD++++++++++l++Ev+GkmV r+e+ +dd+l
     bn03581    11    MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEgNIDDSL 57   

                   IGANPSAEGgegDEGveetvervvDiVlnfRLqetnCsfDKksfktYiKg
                   IG+N+SAEG+eg EG+e tv+++vDiV+n++Lqet  sf+K+ +k+YiK+
     bn03581    58 IGGNASAEGPEG-EGTESTVITGVDIVMNHHLQET--SFTKEAYKKYIKD 104  

                   YMKavkakLqeenperAeVslFkkniqgfvKklLakDRFKdyqFFiGEsM
                   YMK++k kL+e  per  V++F++++++++K++La+  FK+yqFFiGE+M
     bn03581   105 YMKSIKGKLEEQRPER--VKPFMTGAAEQIKHILAN--FKNYQFFIGENM 150  

                   npGaeDGmValmnYRDvEdGetPymiffKdGLiE<-*
                   np   DGmVal++YR  EdG+tPymiffKdGL+    
     bn03581   151 NP---DGMVALLDYR--EDGVTPYMIFFKDGLEM    179  

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