hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-02584658/chunk_1/iprscan-20090618-02584658.nocrc
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Query sequence: bn03774
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00023.20.ls Ankyrin repeat                                  83.4    6.6e-22   3
PF00023.20.fs Ankyrin repeat                                  78.4    7.2e-21   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00023.20.ls   1/3     147   179 ..     1    33 []    32.3  1.6e-06
PF00023.20.fs   1/4     147   179 ..     1    33 []    30.3  1.8e-07
PF00023.20.fs   2/4     180   212 ..     1    33 []    17.2  0.00082
PF00023.20.ls   2/3     180   212 ..     1    33 []    19.2    0.014
PF00023.20.fs   3/4     213   245 ..     1    33 []    29.9  2.4e-07
PF00023.20.ls   3/3     213   245 ..     1    33 []    31.9  2.1e-06
PF00023.20.fs   4/4     246   262 ..     1    17 [.     1.0       27

Alignments of top-scoring domains:
PF00023.20.ls: domain 1 of 3, from 147 to 179: score 32.3, E = 1.6e-06
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       GfTPL +A+  g +e v++Ll+ GAd+++  +   
     bn03774   147    RGFTPLIWASAFGEIETVRFLLEWGADPHILAK    179  

PF00023.20.fs: domain 1 of 4, from 147 to 179: score 30.3, E = 1.8e-07
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       GfTPL +A+  g +e v++Ll+ GAd+++  +   
     bn03774   147    RGFTPLIWASAFGEIETVRFLLEWGADPHILAK    179  

PF00023.20.fs: domain 2 of 4, from 180 to 212: score 17.2, E = 0.00082
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      + +++L lA+  g++++v lLl++  d+n+ d    
     bn03774   180    ERESALSLASTGGYTDIVGLLLERDVDINIYDW    212  

PF00023.20.ls: domain 2 of 3, from 180 to 212: score 19.2, E = 0.014
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      + +++L lA+  g++++v lLl++  d+n+ d    
     bn03774   180    ERESALSLASTGGYTDIVGLLLERDVDINIYDW    212  

PF00023.20.fs: domain 3 of 4, from 213 to 245: score 29.9, E = 2.4e-07
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +G TPL +A++ +++++v+ Ll +GAdl    d   
     bn03774   213    NGGTPLLYAVRGNHVKCVEALLARGADLTTEAD    245  

PF00023.20.ls: domain 3 of 3, from 213 to 245: score 31.9, E = 2.1e-06
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +G TPL +A++ +++++v+ Ll +GAdl    d   
     bn03774   213    NGGTPLLYAVRGNHVKCVEALLARGADLTTEAD    245  

PF00023.20.fs: domain 4 of 4, from 246 to 262: score 1.0, E = 27
                   *->dGfTPLHlAalrgnlev<-*
                       G+TP  lA+  g+ +v   
     bn03774   246    SGYTPMDLAVALGYRKV    262  

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