hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-03183777/chunk_1/iprscan-20090618-03183777.nocrc
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Query sequence: ee03811
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF04902.3.fs Conserved region in Nab1                       491.4   3.6e-155   1
PF04902.3.ls Conserved region in Nab1                       493.3   2.6e-145   1
PF04905.4.fs NAB conserved region 2 (NCD2)                  417.5   1.2e-124   1
PF04905.4.ls NAB conserved region 2 (NCD2)                  419.4   4.7e-123   1
PF04904.4.ls NAB conserved region 1 (NCD1)                  242.7    7.4e-70   1
PF04904.4.fs NAB conserved region 1 (NCD1)                  240.7    2.9e-69   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF04904.4.ls   1/1      19   100 ..     1    82 []   242.7  7.4e-70
PF04904.4.fs   1/1      19   100 ..     1    82 []   240.7  2.9e-69
PF04905.4.fs   1/1     180   337 ..     1   175 []   417.5 1.2e-124
PF04905.4.ls   1/1     180   337 ..     1   175 []   419.4 4.7e-123
PF04902.3.fs   1/1     338   503 .]     1   166 []   491.4 3.6e-155
PF04902.3.ls   1/1     338   503 .]     1   166 []   493.3 2.6e-145

Alignments of top-scoring domains:
PF04904.4.ls: domain 1 of 1, from 19 to 100: score 242.7, E = 7.4e-70
                   *->aALPRtLGELqLYRvLqkAnLLsYyeaFiqqGGDDvqqLCEAGEEEF
                      aALPRtLGELqLYR+LqkAnLLsY++aFiqqGGDDvqqLCEAGEEEF
     ee03811    19    AALPRTLGELQLYRILQKANLLSYFDAFIQQGGDDVQQLCEAGEEEF 65   

                   LEimALvGmAsKPLHvRRLqKALReWvtnPGLFsq<-*
                   LEimALvGmAsKPLHvRRLqKALR+WvtnPGLF+q   
     ee03811    66 LEIMALVGMASKPLHVRRLQKALRDWVTNPGLFNQ    100  

PF04904.4.fs: domain 1 of 1, from 19 to 100: score 240.7, E = 2.9e-69
                   *->aALPRtLGELqLYRvLqkAnLLsYyeaFiqqGGDDvqqLCEAGEEEF
                      aALPRtLGELqLYR+LqkAnLLsY++aFiqqGGDDvqqLCEAGEEEF
     ee03811    19    AALPRTLGELQLYRILQKANLLSYFDAFIQQGGDDVQQLCEAGEEEF 65   

                   LEimALvGmAsKPLHvRRLqKALReWvtnPGLFsq<-*
                   LEimALvGmAsKPLHvRRLqKALR+WvtnPGLF+q   
     ee03811    66 LEIMALVGMASKPLHVRRLQKALRDWVTNPGLFNQ    100  

PF04905.4.fs: domain 1 of 1, from 180 to 337: score 417.5, E = 1.2e-124
                   *->GeekeGssslSPfagvGvSespgedsvalGDFDPnapsltENdrLea
                      ++++e+++slSP a++G+++sp+e+s+a                L+a
     ee03811   180    HHATESEHSLSP-ADLGSPASPKESSEA----------------LDA 209  

                   aavsrvaEcverisksLPkldlnEvkeLlklnKklakeVghifemddadp
                   aa+++vaEcver++++LPk+dlnEvkeLlk+nKklak++ghifem+d+dp
     ee03811   210 AAALSVAECVERMAPTLPKSDLNEVKELLKTNKKLAKMIGHIFEMNDDDP 259  

                   skeeeiRKYSaIYGRfDsKRkegKvLtLHElTVNEAAAQLClkdnsLLtR
                   +keeeiRKYSaIYGRfDsKRk+gK+LtLHElTVNEAAAQLC+kdn+LLtR
     ee03811   260 HKEEEIRKYSAIYGRFDSKRKDGKHLTLHELTVNEAAAQLCVKDNALLTR 309  

                   RdELFaLARQiareatYkyakktsrkrs<-*
                   RdELFaLARQi+re+tYky+++t+++++   
     ee03811   310 RDELFALARQISREVTYKYTYRTTKSKC    337  

PF04905.4.ls: domain 1 of 1, from 180 to 337: score 419.4, E = 4.7e-123
                   *->GeekeGssslSPfagvGvSespgedsvalGDFDPnapsltENdrLea
                      ++++e+++slSP a++G+++sp+e+s+a                L+a
     ee03811   180    HHATESEHSLSP-ADLGSPASPKESSEA----------------LDA 209  

                   aavsrvaEcverisksLPkldlnEvkeLlklnKklakeVghifemddadp
                   aa+++vaEcver++++LPk+dlnEvkeLlk+nKklak++ghifem+d+dp
     ee03811   210 AAALSVAECVERMAPTLPKSDLNEVKELLKTNKKLAKMIGHIFEMNDDDP 259  

                   skeeeiRKYSaIYGRfDsKRkegKvLtLHElTVNEAAAQLClkdnsLLtR
                   +keeeiRKYSaIYGRfDsKRk+gK+LtLHElTVNEAAAQLC+kdn+LLtR
     ee03811   260 HKEEEIRKYSAIYGRFDSKRKDGKHLTLHELTVNEAAAQLCVKDNALLTR 309  

                   RdELFaLARQiareatYkyakktsrkrs<-*
                   RdELFaLARQi+re+tYky+++t+++++   
     ee03811   310 RDELFALARQISREVTYKYTYRTTKSKC    337  

PF04902.3.fs: domain 1 of 1, from 338 to 503: score 491.4, E = 3.6e-155
                   *->GERDELsPKRiKvEDGFPDFqesvqtLFqqARAKsEELAALssqqtE
                      GERDELsPKRiKvEDGFPDFq+svqtLFqqARAKsEELAALssqq+E
     ee03811   338    GERDELSPKRIKVEDGFPDFQDSVQTLFQQARAKSEELAALSSQQPE 384  

                   KvmAKqmElLCaqAsYERLqqaERRLsAGLYRqsseEHsPdGLtsDnsDG
                   KvmAKqmE+LC+qA+YERLq+aERRLsAGLYRqsseEHsP+GLtsDnsDG
     ee03811   385 KVMAKQMEFLCNQAGYERLQHAERRLSAGLYRQSSEEHSPNGLTSDNSDG 434  

                   qGERPLnLRmPnlqnRqPHHFvvDGELsRLYssEAKsHssEsLGiLKDYP
                   qGERPLnLRmPnlqnRqPHHFvvDGELsRLY+sEAKsHssEsLGiLKDYP
     ee03811   435 QGERPLNLRMPNLQNRQPHHFVVDGELSRLYPSEAKSHSSESLGILKDYP 484  

                   HsAFtLEKKviKtEPEDsR<-*
                   HsAFtLEKKviKtEPEDsR   
     ee03811   485 HSAFTLEKKVIKTEPEDSR    503  

PF04902.3.ls: domain 1 of 1, from 338 to 503: score 493.3, E = 2.6e-145
                   *->GERDELsPKRiKvEDGFPDFqesvqtLFqqARAKsEELAALssqqtE
                      GERDELsPKRiKvEDGFPDFq+svqtLFqqARAKsEELAALssqq+E
     ee03811   338    GERDELSPKRIKVEDGFPDFQDSVQTLFQQARAKSEELAALSSQQPE 384  

                   KvmAKqmElLCaqAsYERLqqaERRLsAGLYRqsseEHsPdGLtsDnsDG
                   KvmAKqmE+LC+qA+YERLq+aERRLsAGLYRqsseEHsP+GLtsDnsDG
     ee03811   385 KVMAKQMEFLCNQAGYERLQHAERRLSAGLYRQSSEEHSPNGLTSDNSDG 434  

                   qGERPLnLRmPnlqnRqPHHFvvDGELsRLYssEAKsHssEsLGiLKDYP
                   qGERPLnLRmPnlqnRqPHHFvvDGELsRLY+sEAKsHssEsLGiLKDYP
     ee03811   435 QGERPLNLRMPNLQNRQPHHFVVDGELSRLYPSEAKSHSSESLGILKDYP 484  

                   HsAFtLEKKviKtEPEDsR<-*
                   HsAFtLEKKviKtEPEDsR   
     ee03811   485 HSAFTLEKKVIKTEPEDSR    503  

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